PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G255100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB_related
Protein Properties Length: 660aa    MW: 73889.2 Da    PI: 5.2009
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G255100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07552601147
                          TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                          r++WT+eE+ ++   v++ ++      W+ I + ++ ++ + +++s+++++
  Manes.01G255100.1.p 552 RLSWTEEEERKFEAIVRLNPPSldkcFWNDIFKFFP-TKGRGDLVSYYFNV 601
                          789*****************88**************.777777*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010142.6E-1440130No hitNo description
SuperFamilySSF467747.98E-1642135IPR001606ARID DNA-binding domain
PROSITE profilePS5101116.56143134IPR001606ARID DNA-binding domain
SMARTSM005017.2E-1644135IPR001606ARID DNA-binding domain
Gene3DG3DSA:1.10.150.602.3E-1544146IPR001606ARID DNA-binding domain
PfamPF013889.3E-1167130IPR001606ARID DNA-binding domain
PROSITE profilePS511568.805453603IPR000949ELM2 domain
SMARTSM011890.0053455506IPR000949ELM2 domain
SMARTSM007170.0035551604IPR001005SANT/Myb domain
CDDcd001672.47E-4554602No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010628Biological Processpositive regulation of gene expression
GO:0016575Biological Processhistone deacetylation
GO:0048235Biological Processpollen sperm cell differentiation
GO:0000118Cellular Componenthistone deacetylase complex
GO:0048555Cellular Componentgenerative cell nucleus
GO:0048556Cellular Componentmicrosporocyte nucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MVAGDKCALD CSKTPQKKLQ SKGFLVGLDL FLEVAGLETE PDAELRCQFD NCINFFWKEI  60
CALDAAFPPM LGDGQSVDLF KLFLAVRQKG GYDAVSHNCL WDVVAEESGL SLNLASSVKL  120
VYAKYLDALE RWLERPVDRK SSKSKSSNIT NSETKLSDSG LNVGEVSMEL GSEFKALFSE  180
IMDWKSELNV SAEVDSNGDD KCIVDDEESV HIDTGNSVID FVEVGKLGYS VSKSQKSDSF  240
FDGDHKCKDV QKHLESNLTS LKGCDEDEVK STVVEIDGRK KEDNGNENDV MVSDSDAVEE  300
SISSYKRKRE SMYGVLNWIT GIARNPCDPV VVPLPEMSKW ESYANEESWK QILLVREALF  360
LKRDVNSGAG SVCQKNRKMH PCMYDDQVGF AYNFRERINC SRKLLHRKTV FQSQACSQLS  420
SSTTVTGSDS CTKGVFDGDS SSKYSVFDLP VEKTIPLGPD FQAEVPEWTG VVSESNSKWA  480
GTRVWPPKKV DNRLVIEQEP IGKGRKDACG CEVPKSVECV RFHNAERRLR VKRELGLAFK  540
HWRFDKMGED VRLSWTEEEE RKFEAIVRLN PPSLDKCFWN DIFKFFPTKG RGDLVSYYFN  600
VFLLQRRAQQ NRSTPNNIDS DDDESECGLV TNGSGREAAP KSPGSLLYSA KKAPRKGGR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1526533RRLRVKRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G255100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021612808.10.0AT-rich interactive domain-containing protein 2
RefseqXP_021612816.10.0AT-rich interactive domain-containing protein 2
TrEMBLA0A2C9WP420.0A0A2C9WP42_MANES; Uncharacterized protein
STRINGcassava4.1_003489m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43731724