PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G235400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 506aa    MW: 54266.9 Da    PI: 8.9955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G235400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30262320259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Manes.01G235400.1.p 262 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDKTILTTTYEGNHNHP 320
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-33246322IPR003657WRKY domain
SuperFamilySSF1182902.35E-27254322IPR003657WRKY domain
PROSITE profilePS5081129.218256322IPR003657WRKY domain
SMARTSM007743.4E-36261321IPR003657WRKY domain
PfamPF031062.9E-26263320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MDQQGRELTF FHSGDFLRQN PDLSDRSTDN SVDRGKSNVK EVDFFSSDRT ENLPLDQEMK  60
DGSKSAIVVS VVNTRLNLLT SSSGISETAD GKKSNNELKK LQAELDRQHD DNKKLRSMLD  120
QITKSYKELQ VHLLMAMQKQ AQGNRGEQKG ELNGIASSIK SAQQFMNPRP FAALDVNNPS  180
ASVDKAQDLS SASPTNTTES MSQINPGKQV SKEAGLDQTS QSWGSPKSPR LEPGKCEEQV  240
PEVPFRKARV SVRARSEAPL ITDGCQWRKY GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ  300
RCAEDKTILT TTYEGNHNHP LPPAATGMAN TTSAAAAMLL SGSTASREGL TSTSSFFPSL  360
PYASTMATLS SSAPFPTITL DLTQSPNSVP FLRAPLSTTF PLPLHGYPQL LGHPMYVPPK  420
LPAAAAAIPS VQLRQRHASM VETVTAAIAS DPNFTAVLAA AISSVIGTQR SNDGSSSNVS  480
APNGGVSGLP GSPQFPQSCT TFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21248324176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G235400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276090.0KT827609.1 Manihot esculenta WRKY transcription factor 34 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021619106.10.0probable WRKY transcription factor 47
TrEMBLA0A140H8N80.0A0A140H8N8_MANES; WRKY transcription factor 34
STRINGcassava4.1_021176m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-107WRKY family protein
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]