PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G200800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 346aa    MW: 38906 Da    PI: 10.1424
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G200800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1017e-32279336359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Manes.01G200800.1.p 279 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 336
                          99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-18230275IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.3E-34265337IPR003657WRKY domain
PROSITE profilePS5081130.641272338IPR003657WRKY domain
SuperFamilySSF1182901.14E-27275337IPR003657WRKY domain
SMARTSM007742.9E-39277337IPR003657WRKY domain
PfamPF031061.1E-27279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEEVEEANRT AVESCHRVLG LLSQPQDQVQ YRNLMVETGE AVFRFKRVIS LLNSNLGHAR  60
VRKLKKLPTP LCQSLLLDNP HHRTDLQSKN FQFMQSGSYL DSRPIQELGS NAKNSLCFGT  120
PSLELSSNGK NPLHHSQQTP STHYNFLQQQ QRLQLQQQQQ MKQQAEMMFR RSNSGINLNF  180
DNSSCTPTMS STRSFISSLS IDGSVANLEG SAFHLIGAPR SSDQNSQQLK RKCSGRVEDG  240
SVKCGSSGRC HCSKKRKHRV KRSIKVPAIS NKLADIPPDD YSWRKYGQKP IKGSPHPRGY  300
YKCSSMRGCP ARKHVERCLE DPSMLIVTYE GEHNHPRIPS QSANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20270339775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G200800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276030.0KT827603.1 Manihot esculenta WRKY transcription factor 28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607149.10.0probable WRKY transcription factor 21
SwissprotO043361e-131WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A140H8N20.0A0A140H8N2_MANES; WRKY transcription factor 28
STRINGcassava4.1_011033m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-123WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]