PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Manes.01G189000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 599aa MW: 64977.2 Da PI: 6.6759 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.7 | 3.1e-30 | 247 | 306 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+ Manes.01G189000.1.p 247 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpTCPVRKQVQRCAEDMSILITTYEGTHNHP 306 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-31 | 232 | 308 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-27 | 240 | 308 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.575 | 242 | 308 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-36 | 247 | 307 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.5E-27 | 248 | 306 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 599 aa Download sequence Send to blast |
MTMVDMRSSI PMATSLEKPD AVLQEEKKVM KSNGDEDGIL LGTTKGVDVM VHVKQEEKSR 60 KRPSSMDDQL RSAKAEIGEV REENERLKQL LSKMLKDYQS LEKHFREVVQ EEEANKSTKI 120 TPIYQENEES ELVSLSLGRS SSTEPKKEEK KSSNLTDENE DNEELNNKGL SLGLDCKFEL 180 DSSVTMKNPS SENSFDDEEA KEEEATETWP PSKMLKTTIS AGDEVLQQTQ TKKTRVSVRA 240 RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVSPTCP VRKQVQRCAE DMSILITTYE 300 GTHNHPLPLS ATAMASTTSA AASMLQSRSS SSQPGLGTSV SAPASMSTAN GLNFTVSQNN 360 AIRPHQIYFP NSSSSASTSH PTITLDLTAP TSTSHFNRFP MRYSATCLNF SSSASSTSLE 420 PNSALQTLWN PGYSTYDTLS HSRNNIIGSL NNIGKQPPQD HLYQPQMQMN RQTAATSQQS 480 LTETIAAATK VIALDPNFRS ALAAAITTFV GNGGSAVREN PGGGEHSAGL NSKLGDSLTF 540 NTLYPSSNGG IGCASSYLNK SPPTQQQGSL VSFPPPFPFS ASKSASGSPA SSRDYNKG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 6e-21 | 234 | 308 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Manes.01G189000.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT827613 | 0.0 | KT827613.1 Manihot esculenta WRKY transcription factor 38 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021621556.1 | 0.0 | probable WRKY transcription factor 72 | ||||
Swissprot | A0A3Q7GFB5 | 1e-115 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A2C9WM20 | 0.0 | A0A2C9WM20_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_026701m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 1e-72 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Manes.01G189000.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|