PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G177700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HSF
Protein Properties Length: 266aa    MW: 30938.3 Da    PI: 9.2929
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G177700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35261172102
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d+ +++++sw +++ sfvv  + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv +++         weF++++F+kg k
  Manes.01G177700.1.p  26 FLTKTYQLVDDPLTDHIVSWGNDNASFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVSDR---------WEFANEYFRKGAK 106
                          9****************************************************************999.........************* PP

                          XXXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkks 102
                          +ll++i+r+k+
  Manes.01G177700.1.p 107 HLLSEIHRRKT 117
                          *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.31E-3223115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.4E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.4E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAFTVERCDE EMVFSADSQK PVPAPFLTKT YQLVDDPLTD HIVSWGNDNA SFVVRRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKVV SDRWEFANEY FRKGAKHLLS EIHRRKTPQH  120
QHFPILAHHN LQQEEIFRWN IIDPPIFPLS PKPTTDLLRS LSEDNQRLRM KNYMLLSELS  180
RMATLYNDII YFIQSHVKPA PLVPNEQKGY CSTAPKIVEW DSSCQDQQIM GKSSLTFTGE  240
SNHRQVKLFG VHISSGKKRL LSELR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-2111173131Heat shock factor protein 1
5d5v_B3e-2111173131Heat shock factor protein 1
5d5v_D3e-2111173131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G177700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631461.10.0heat stress transcription factor B-4d-like
SwissprotQ9C6352e-80HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2C9WN680.0A0A2C9WN68_MANES; Uncharacterized protein
STRINGcassava4.1_014046m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-83heat shock transcription factor B4