PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G139800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 379aa    MW: 42257 Da    PI: 6.6426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G139800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.57.6e-062773151154
                          HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           R +++++++++L++l+ +      +K + a++L++A+ YI+ L
  Manes.01G139800.1.p 277 VRKENLRERIANLQRLVAPY-----GKTDTASVLTEAIGYIQFL 315
                          58899************999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.573266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.20E-5276320No hitNo description
SuperFamilySSF474595.37E-11276329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-8276323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEPENLHPQH HLQEQYGGYY SSLLFQPEYK ASSNNNMNPD IFLESWQPYR GSLYPAGSMS  60
FCATAAPRCF TQQSADELLL SKIKEEMTDS FPRLSEIVSS PCTDNILESH SVSTMYKLDH  120
HHDENQWLCS NFSSADHVTE LQLSAGLELN YCNNNVQDCT SILESSSSAS SRSNYFSHFL  180
PSINISNSDL DLNLQAVDLL TPKSDAASAI SRKQKASQNS SVDHFMGELI KESPASSSNK  240
ASDFEDAVQR KKRSSSFVET KKKHDPPSRS SCPPLKVRKE NLRERIANLQ RLVAPYGKTD  300
TASVLTEAIG YIQFLHDQVQ TLSVPYMRSS NSNPTRKMQA SSSEEDGKRQ PKRDLVNRGL  360
RLVPLSCVSF FNGYSAGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G139800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021594406.10.0transcription factor bHLH110-like
TrEMBLA0A2C9WNA20.0A0A2C9WNA2_MANES; Uncharacterized protein
STRINGcassava4.1_027173m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40453254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-39bHLH family protein