PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G128000.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 337aa    MW: 37819.1 Da    PI: 8.3396
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G128000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.11.6e-32188245259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK vk+s +prsYYrCt++ C+vkk++ers +dp++v++tYeg+Hnh+
  Manes.01G128000.1.p 188 EDGYKWRKYGQKAVKNSSYPRSYYRCTTQMCTVKKRIERSFQDPSIVITTYEGKHNHQ 245
                          8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-33172247IPR003657WRKY domain
SuperFamilySSF1182902.75E-28180247IPR003657WRKY domain
PROSITE profilePS5081131.456182247IPR003657WRKY domain
SMARTSM007742.9E-37187246IPR003657WRKY domain
PfamPF031068.0E-25188245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MSNNENKNPF QHDPFHYSNQ RGSGGRSEFP FFDDNHPSTM YNNQPSLIRQ TLPCSDPFMS  60
FTECLSMDYN TLSTAFDHMP CSPSEVISSS IHHCSGAPAG KSSSPPANDG HPSTPDSSIS  120
SSSNDAATQQ ASPKTKEKHH HHHQKQHQDA MEKTKNKVCS KSKTKQKEKG EREARFCFLT  180
KSEIDLLEDG YKWRKYGQKA VKNSSYPRSY YRCTTQMCTV KKRIERSFQD PSIVITTYEG  240
KHNHQCPATI RPNAAPGILS PNSLLPSTSS IMPHRPSFPQ DLLARLLPPD DNSHHGDPTA  300
MFYPNLFAPQ QQLHHLPDYG LLQDLLPSSF LPKQHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-261802481078Probable WRKY transcription factor 4
2lex_A4e-261802481078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.01G128000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8275890.0KT827589.1 Manihot esculenta WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622273.10.0probable WRKY transcription factor 71
TrEMBLA0A140H8L80.0A0A140H8L8_MANES; WRKY transcription factor 14
STRINGcassava4.1_029981m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22313483
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-48WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]