PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.01G123600.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 639aa MW: 72798 Da PI: 6.1108

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.01G123600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.8e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgk Manes.01G123600.1.p 6 LPPGFRFHPTDEELVAYYLKRKINGHKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGK 94 79**************************.99***********6434555777**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v s + ++vg+kktLv+y+grap+g++tdWvmheyrl Manes.01G123600.1.p 95 DRKVNS-QMRAVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 **.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.925	6	156	IPR003441	NAC domain
Pfam	PF02365	5.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKSANI PKMGEHFAST SNQMASEHSS 180 SIELYSEGRC EDFESSNYNM PIDTCSPSIG NTGSPIHLAE TRDGKWKQFL SEDAFTFSSP 240 SFSSYGALPY PLPKIDVAFE CARLQHSSLP PLEVEDFPHL GLTDVKVMHE NTNRKDILQE 300 ILSVAHASQE LINHSNTQDT WGGNYAADNN NFSFVAGKDM HLYSNINSMR CMDKSWGDPN 360 LRFIEIGNSA EDFKTERMTE NLRWVGMTDE ELHKSFMEEH KVVPIENIST FQTREGNELQ 420 GGNGHQVDCM GFNETDDYSL GFINDDDPNG NLIDESNVDD LASSPSFEVV EEIKVSHGMF 480 VSTRQAAETF FHRLVPSQTV KIHLNPADTF SMQKIEMHSA ADETQSFKTN TFSRESNFME 540 MSKSLNPWKK FATAVFCTIV ILMSKLMMHR MRENGYNVKP RKMEERNKWN HDYSENDLLV 600 SIRSGGNQFS VLLKKLGIFL TISLAVCTMW VNHVMLTS*

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING HKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QMRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECET ASGLQDAYAL CRVFKKSANI PKMGEHFAST SNQMASEHSS  180
SIELYSEGRC EDFESSNYNM PIDTCSPSIG NTGSPIHLAE TRDGKWKQFL SEDAFTFSSP  240
SFSSYGALPY PLPKIDVAFE CARLQHSSLP PLEVEDFPHL GLTDVKVMHE NTNRKDILQE  300
ILSVAHASQE LINHSNTQDT WGGNYAADNN NFSFVAGKDM HLYSNINSMR CMDKSWGDPN  360
LRFIEIGNSA EDFKTERMTE NLRWVGMTDE ELHKSFMEEH KVVPIENIST FQTREGNELQ  420
GGNGHQVDCM GFNETDDYSL GFINDDDPNG NLIDESNVDD LASSPSFEVV EEIKVSHGMF  480
VSTRQAAETF FHRLVPSQTV KIHLNPADTF SMQKIEMHSA ADETQSFKTN TFSRESNFME  540
MSKSLNPWKK FATAVFCTIV ILMSKLMMHR MRENGYNVKP RKMEERNKWN HDYSENDLLV  600
SIRSGGNQFS VLLKKLGIFL TISLAVCTMW VNHVMLTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	3e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	3e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	3e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	3e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	3e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	3e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	3e-57	1	162	15	174	NAC domain-containing protein 19
4dul_A	3e-57	1	162	12	171	NAC domain-containing protein 19
4dul_B	3e-57	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.01G123600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605223	0.0	KR605223.1 Manihot esculenta NAC transcription factors 85 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021592555.1	0.0	NAC domain-containing protein 86-like
TrEMBL	A0A0M5J8S1	0.0	A0A0M5J8S1_MANES; NAC transcription factors 85
STRING	cassava4.1_031698m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-175	NAC domain containing protein 28

Link Out ? help Back to Top
Phytozome	Manes.01G123600.1.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]