PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_80107.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 643aa    MW: 72151.4 Da    PI: 5.5587
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_80107.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.7e-085376327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                  +++C +f++ G C  Gd+C+F+Hgp
  MLOC_80107.1 53 MVPCYYFQK-GNCIKGDKCPFSHGP 76
                  789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.812126IPR000571Zinc finger, CCCH-type
SMARTSM003560.011225IPR000571Zinc finger, CCCH-type
PfamPF146080.0023524No hitNo description
SMARTSM003561.6E-65076IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.4745077IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65175IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-45476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MNPRDCYYWL NGNCLNPKCS FRHPPIDGMF GAPTPGIPAL SSHYAAYNSG KQMVPCYYFQ  60
KGNCIKGDKC PFSHGPQTAG NNPPEQVAKV SSFPLEQPQT QKNEFLGVKE FAQTNHLVQQ  120
GGPIIDDRSK MSVNRAAANF ARTAAAAMPA ELASSAVKSL PKSGRVQNSM PAANKSVGTS  180
SGEDHRECYQ NNLPVETDPM QDWNQPYQTP PQDDLPEDSR DADDLLGESS PGFDVLVAND  240
TDAGAYLHDA DDFGRDIYPV EDYEYAPADF EIQPHHEREL FNGMGEQGPI VQMYDGYDRK  300
RRRTSSERNL DRPSYSERRS RQRETGPVEI DGSDLRHRLR RRKINGSPGI SPERIGESRR  360
RDDRHRERAY DGHRTHRERH QGPRGSTLSS RLQGRIKLPG RSPDRVDARS ERERDRRQLR  420
DRLSPVMHMD IQGGRHREAG HHQERVRQRS SERASSARMA DGKHSRRNVT DSLNFAGRKD  480
FGPESRKANG SVQSEASLDF EGPTPLSVIL QRKRQAASGN GNGSSAQSVK EDNSAAVSHR  540
QAESPVEAEK QGYDNTVSSE EYKSRSGDEE YKEEGLVPAS SSHGDKAEAE DMIEVENQEA  600
DNYEQRQGES EYEGTEDENA YQDDEEEFED DDDFARKVGV VFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298302RKRRR
2298303RKRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_80107.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3757340.0AK375734.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3102P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191143.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLM0ZA660.0M0ZA66_HORVV; Uncharacterized protein
STRINGMLOC_80107.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]