PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_80060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRF | ||||||||
Protein Properties | Length: 218aa MW: 23006.1 Da PI: 9.8372 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79 | 4.5e-25 | 133 | 176 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e MLOC_80060.1 133 EPEPGRCRRTDGKKWRCSRDVVQGHKYCERHVHRGRGRSRKPVE 176 69***************************************998 PP | |||||||
2 | QLQ | 51.8 | 2.4e-18 | 67 | 103 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k MLOC_80060.1 67 SVLTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 103 5689********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.7E-5 | 67 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.619 | 68 | 103 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 8.0E-11 | 69 | 102 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.31 | 133 | 177 | IPR014977 | WRC domain |
Pfam | PF08879 | 7.8E-21 | 134 | 176 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006995 | Biological Process | cellular response to nitrogen starvation | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0051365 | Biological Process | cellular response to potassium ion starvation | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MADEKEGDSL QPPSKLPRLS SADENAGAVT MAVSSPLGLG LGLGLGGDSR GEQHALEARA 60 VAAAAKSVLT FMQQQELEHQ VLIYRYFAAG APVPVHLVLP IWKSVAASSF GPHRFPSLIG 120 LGSMCFDYRS SMEPEPGRCR RTDGKKWRCS RDVVQGHKYC ERHVHRGRGR SRKPVEGAPA 180 APAHNGSSTA ATAAPSRGIG FSPAGILHAT HSAAAHAT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_80060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099737 | 1e-170 | FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020180427.1 | 1e-124 | growth-regulating factor 10-like | ||||
Swissprot | Q6EPP9 | 9e-94 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A1D6DHE1 | 1e-125 | A0A1D6DHE1_WHEAT; Growth regulating factor 7-A1 | ||||
STRING | MLOC_80060.1 | 1e-158 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6221 | 30 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36400.1 | 1e-38 | growth-regulating factor 3 |
Publications ? help Back to Top | |||
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