PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_77955.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 198aa MW: 21518.2 Da PI: 9.0481 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 32 | 86 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++++++ LAk+l+L rqV vWFqNrRa+ k MLOC_77955.2 32 RKKLRLSKEQAAFLEDSFKEHSTLNTKQKVALAKQLNLLPRQVEVWFQNRRARTK 86 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.3 | 2.8e-40 | 32 | 122 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LE+sF+e+++L++++Kv+la++L+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk MLOC_77955.2 32 RKKLRLSKEQAAFLEDSFKEHSTLNTKQKVALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-ALK 122 69*************************************************************************************9.555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-18 | 16 | 82 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.05E-18 | 19 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 28 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 30 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 32 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.98E-16 | 32 | 89 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 63 | 86 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 2.5E-24 | 88 | 131 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 6.1E-11 | 88 | 122 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDFSAQGDRD AAPAGGGGGS RGSDEDDGGS ARKKLRLSKE QAAFLEDSFK EHSTLNTKQK 60 VALAKQLNLL PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LQKELAELRA 120 LKSVHPFYMH LPATTLSMCP SCERVASNSA PAPSPAGIAA APEQQHRPSS FAALFSSARS 180 FPLASSPSQA PMPAPSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 88 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_77955.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036447 | 1e-162 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. | |||
GenBank | KJ726911 | 1e-162 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148543.1 | 1e-100 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | A2Z1U1 | 2e-89 | HOX11_ORYSI; Homeobox-leucine zipper protein HOX11 | ||||
Swissprot | Q67UE2 | 7e-89 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | M0Z6P9 | 1e-142 | M0Z6P9_HORVV; Uncharacterized protein | ||||
STRING | MLOC_77955.2 | 1e-143 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 8e-69 | homeobox from Arabidopsis thaliana |