PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_74394.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bHLH

Protein Properties

Length: 230aa MW: 24062.5 Da PI: 10.872

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_74394.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.1	2.1e-05	35	64	2	30
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.a 30 rr+ + rEr RR+ + f+eL llP + MLOC_74394.1 35 RRTSPGRERARRQTMSALFAELGALLPVgL 64 888999********************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.096	33	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.09E-6	35	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-5	37	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.09E-6	107	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.7E-5	109	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd02116	0.00449	175	226	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSDDAHGLAL ALGPGAESSP RSTTVEVTRA GAAGRRTSPG RERARRQTMS ALFAELGALL 60 PVGLPHRVRC LVFVRSSPFL PTLLFVSPAF ASIDRGIELM PRDRPDPWFA AQACRADVVD 120 GAIAYVRALE DTAAELEAHR AMSAGRGRAR GGGGSTEVVA SGETSCFAVR LRAARPGALT 180 RVLQVFQRHR VPVLAATVAR NGGEAAVTVT TAMVDPALAG KIEADIISNA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_74394.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187346.1	9e-62	uncharacterized protein LOC109773057
TrEMBL	A0A3B5YSQ8	5e-63	A0A3B5YSQ8_WHEAT; Uncharacterized protein
STRING	MLOC_74394.1	1e-160	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9141	19	31