PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70350.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 266aa    MW: 29626.9 Da    PI: 5.3763
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70350.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1965118456
                   -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                   +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  MLOC_70350.2  65 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 118
                   458**************9899********************************9 PP
2HD-ZIP_I/II124.25.9e-4063156193
   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL+++ydal+++ e+L++++ +L+++l+e
  MLOC_70350.2  63 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDFAALRASYDALHSRVESLKHDKLALAAQLQE 156
                   69******************999********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.75E-1854122IPR009057Homeodomain-like
PROSITE profilePS5007117.84859120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.4E-2059125IPR009057Homeodomain-like
SMARTSM003894.7E-1962124IPR001356Homeobox domain
CDDcd000861.41E-1764121No hitNo description
PfamPF000463.1E-1764118IPR001356Homeobox domain
PRINTSPR000316.7E-791100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000316.7E-7100116IPR000047Helix-turn-helix motif
PfamPF021831.2E-14120161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDYHHHHHQQ QQQFLMPPPA SLPAAQQQQQ QQQQMCAPMM DMEMEEQVCF VGRGGGGGGR  60
GAERKRRFTE EQIRSLESMF HAHHAKLEPR EKAELARELG LQPRQVAIWF QNKRARWRSK  120
QLEQDFAALR ASYDALHSRV ESLKHDKLAL AAQLQELSER LRERDGGSGG GGGGATIAAA  180
SSSSCNGGGR ELDDDKRNGD VEQEPTESCV LVGTACATPA DVSVSVESEC DDHLRYDGAV  240
FPESFCATPE LWEPWPWPPV EWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_70350.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3589360.0AK358936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1086B15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200397.11e-126homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK05e-87HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ55e-87HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLM0YKW40.0M0YKW4_HORVV; Uncharacterized protein
STRINGMLOC_70350.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-32homeobox 7