PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_66385.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 247aa    MW: 26675.1 Da    PI: 6.1714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_66385.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-144389354
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  ++h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L ++++++k+L
  MLOC_66385.1 43 KSHSEAERRRRERINSHLARLRSLLPNT-----TKTDKASLLAEVIQHVKEL 89
                  79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.1684089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-124389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-54392No hitNo description
SuperFamilySSF474592.88E-1644111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-1644110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-144695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.15E-8127184No hitNo description
Gene3DG3DSA:3.30.70.2603.9E-5127176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGHHGSPVHG MMMPPPFGAS PFGDFGRMTA QEIMDAKALA ASKSHSEAER RRRERINSHL  60
ARLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSEIREEA CPLPTEADEL TVDASSDEDG  120
RLLVRASLCC DDRPDLLPDL IRALKALRLR ALKAEITTLG GRVKNVLVVT EDDSVACDGD  180
QQDEDGGNMQ APMSPQHAVA SIQEALRAVM ERTSSSSGAE DSGGSASGGL KRQRTTSLSA  240
ILENRSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14853ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_66385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3771630.0AK377163.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3150E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189500.11e-167transcription factor bHLH30-like
SwissprotQ9S7Y19e-75BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A287PAK71e-174A0A287PAK7_HORVV; Uncharacterized protein
STRINGMLOC_66385.11e-179(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-44bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]