PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65953.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 525aa    MW: 55558.5 Da    PI: 7.9783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65953.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.5e-12328373454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    h + ErrRR+r+N++f++Lr llP+       K +Ka +L  ++eY+ +L
  MLOC_65953.1 328 HHVISERRRRERLNDSFQTLRALLPPG-----SKKDKANVLASTTEYMAKL 373
                   58899********************95.....599************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.51E-16323391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-12326377No hitNo description
Gene3DG3DSA:4.10.280.103.4E-15327391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-10329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MDSVFALAAV PRALVLERAA ARVPGCLYLC LWAPVTAQLP SSHLFCLDAW IAGGGGGARA  60
RAGFEAYRGA LCAVVSGCVP GWAYREGRAY MELPEPDLTS SASLQVQQQF YHEAGTKMAV  120
FMGCESGEIE IGLSTTSVAA AAVADHVHQS FLEDLLQLPP AGLSSSSSPV PSLSIGSPEY  180
SSLIRAMATP AATAGEPSTQ PLLMHASSLP GLLAPIVEAN DYALMAQAML AAIPSPGAST  240
TSTPPPPPCP PWLASHRSQR SSPRRTTAFK PYRAALSPRA RPRPGAPGQR MIKTCMSLLA  300
SVHMSMRNQP ELAGAHHEPP PSSTSQLHHV ISERRRRERL NDSFQTLRAL LPPGSKKDKA  360
NVLASTTEYM AKLVSQVTQL RERNLQLEAE LGLNPSASDI NNPSGKTVEV EVTTGASTST  420
STSSTTPSQQ PREVGVRVTV RAECDMSDML VSLLARLKDA GGFMVVAAEA RQQSSALARA  480
SLTLRMTEAG DVVDATRLEE ALTKVVEDAV MKTPPPPVVP PPRSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616660.0AK361666.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154236.10.0putative transcription factor bHLH041
TrEMBLA0A287X7950.0A0A287X795_HORVV; Uncharacterized protein
STRINGMLOC_65953.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-18bHLH family protein