PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65058.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ZF-HD
Protein Properties Length: 302aa    MW: 31745.7 Da    PI: 7.5361
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65058.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.91.9e-3171123457
   ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                   +rY+eClkNhA+ +GghavDGCgEf+++ geeg+++al+CaAC+CHRnFHRre+
  MLOC_65058.1  71 ARYRECLKNHAVGIGGHAVDGCGEFIAA-GEEGSIDALRCAACNCHRNFHRRES 123
                   79*************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2464124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-2871123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.4E-2972122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.59473122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.59E-20224297IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-31229298IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-26236292IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSMDFDDHDD GDEEMHMSMP MPMPMPVSSS YETPPPLSTG LAGAGITPNK PPGGGGGGGE  60
LGGRAKVPGG ARYRECLKNH AVGIGGHAVD GCGEFIAAGE EGSIDALRCA ACNCHRNFHR  120
RESDFPAGAE GSPFSPTAMV PYGGVPHHQF SPYYRTPAGY LHHHQHHMAA AAAAVAAAAA  180
GHPRPLALPS TSHSGRDDAE ELSGMAAGPM SALAPLSSMS LGAGPSGYGS GSGSGKKRFR  240
TKFTQEQKDK MLAFAERVGW RIQKHDEAAV LHFCDEVGVK RHVLKVWMHN NKHTLGKKPP  300
SI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-282372941875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65058.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165793.11e-167zinc-finger homeodomain protein 1
SwissprotQ6YXH51e-136ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM0Y2700.0M0Y270_HORVV; Uncharacterized protein
STRINGMLOC_65058.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.19e-57homeobox protein 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]