PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64801.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 486aa    MW: 54833.5 Da    PI: 9.2214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64801.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.17.6e-142883721598
                   -EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
            B3  15 rlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                   +l++p ++a +h  +  es+t+tle ++   ++W  ++ ++  +++++l + W +Fv +n+++egD+++F  ++  ++ +++v+++r
  MLOC_64801.2 288 LLIIPEEHAIAHFPN--ESVTITLEAPDKksKKWHPRFYMTEDRSECMLIGHWLDFVCDNNVQEGDICIFIPEKGgMRSKFTVHLLR 372
                   689*********855..67777777654444*******88999999*************************9876699999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1239142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1040140IPR015300DNA-binding pseudobarrel domain
CDDcd100179.47E-944141No hitNo description
PROSITE profilePS508636.80947144IPR003340B3 DNA binding domain
SMARTSM010190.004750146IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16266372IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16267372IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.814274374IPR003340B3 DNA binding domain
SMARTSM010190.0055280374IPR003340B3 DNA binding domain
PfamPF023621.1E-11288373IPR003340B3 DNA binding domain
CDDcd100171.52E-17289372No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MPSKDYVLHR KKEKNYVLQG KLDLTAAQKA KIDAIDEKIR PKIPMLVVRM KKTNVKLYSD  60
LVAILKDYAV NHFPSKTQTI TLKLHQKSKE WMCNFRVMPD EKGHHLYLHE FVRDNNVGEG  120
DLCIFQPMTK GDVRNFKVTV HHLSKASVDH SPVERNDICT NDGTIQEKSS YSVDIRSSSD  180
DHTEQPSGRK IYPSCQRGSS RDHRNTAKKA AKSTSFEKSG EESPLEYNSV KSDDRQTSRG  240
HNYALSLGSC LSGAQYAKVI ALKERIQPET AVYVDVMNQR AVELPSPLLI IPEEHAIAHF  300
PNESVTITLE APDKKSKKWH PRFYMTEDRS ECMLIGHWLD FVCDNNVQEG DICIFIPEKG  360
GMRSKFTVHL LRGETSHSGD GTGGVQVAGS DEGKTNTKRK CFLGSNVHRV SHEPLERNNS  420
DGFIQKRKKS NGLVPPYILP AMTHLSPSQE NIVEAKVQAI QSEVPIYVSI MKKRCISAIK  480
HNMLVS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64801.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A287NB220.0A0A287NB22_HORVV; Uncharacterized protein
STRINGMLOC_64801.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172