PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64735.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 341aa    MW: 37057.9 Da    PI: 5.9424
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64735.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.8e-12164211355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k Lq
  MLOC_64735.1 164 QDHILAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 211
                   67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.758161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-10164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17165227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-13166215No hitNo description
SMARTSM003536.7E-15167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QTDATLEQYT EQQIAVAFGQ GEMEAALMQQ QYAAAAVGEH  60
RPRKAAKVNT SWDSCVTEQG SPADSSSPTI LSFGGHADAF AKAPQAGSAA AYYGAASAPV  120
APVKPKQEVD AAAVVAPFQQ VKRSYDAMVA EPARAPSRPA AQNQDHILAE RKRREKLSER  180
FIALSKIVPG LKKMDKASVL GDAIKYVKTL QEQVKGMEEV ARRRPVESAV LVKKSQLAAD  240
EDDGSSCDEN FEGADAGLPE IEARMSDRTV LVKIHCENRR GVLVAALSEL ESMDLTIMNT  300
NVLPFTTSSI DITIMATAGE HFSLSVKDIV RKLHQAFKSS P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERKRRE
2170175RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64735.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675910.0AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152395.10.0transcription factor bHLH18-like
TrEMBLF2DUM30.0F2DUM3_HORVV; Predicted protein
STRINGMLOC_64735.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-54bHLH family protein