PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64716.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 585aa    MW: 62832.4 Da    PI: 6.5554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64716.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS407.31.5e-1242165772374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshl 96 
                    +lLl+cAe v++++l +aq++L ++ ela+p g+++qR+aayf+eA +arl++s+ +ly+ lp  + + ++    +++aa+++f+ +sP++kfsh+
  MLOC_64716.1 216 LKLLLQCAESVNADNLDEAQTALLEIAELATPFGTSTQRVAAYFAEAVSARLVSSCLGLYAPLPHASPAASRlvNGRVAAAFQVFNGISPLVKFSHF 312
                   689************************************************************7776666665677788999*************** PP

          GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+    s ++le+tg+rL++fA++lg+pfef + va++  +l++e+
  MLOC_64716.1 313 TANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMDALEATGKRLSDFADTLGLPFEFCP-VADKAGNLDPEK 404
                   *****************************************************....***************************.7*********** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L v ++Ea+aV++ +  h+l+d ++s ++    +L l+k+l Pkvv++veq++ h ++sFl+rf++a++yysalfdsl+a+++++s er++vE++ll
  MLOC_64716.1 405 LGVTRREAVAVHWLH--HSLYDVTGSDSN----TLCLIKRLAPKVVTMVEQDLRH-TGSFLARFVDAIHYYSALFDSLDASYGEDSPERHVVEQQLL 494
                   **************9..999999999999....**********************.889************************************** PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +rei+nv+a  g +r+ + + ++ Wr+rl ++GF++++l  +a++qa lll +++sdgy++ ee+g+l lgWkd +L+++SaWr
  MLOC_64716.1 495 SREIRNVLAVGGPSRTGDVK-FGCWRDRLARSGFGAASLAGSATAQAALLLGMFPSDGYTLLEENGALKLGWKDLTLLTASAWR 577
                   **************999887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.319189557IPR005202Transcription factor GRAS
PfamPF035145.2E-122216577IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MVRKRPATDM DLPPPQRHVT GDLSDMTAGP PVLSSATAQL PALPSQLLPP FQLQHQHVDH  60
MDVAGAAPAQ AGEAANTTAF VDGIIRDIIG SSGAGVSVAQ LIHNVREIIH PCNPGLASLL  120
ELRLRSLLAS DPAPPQQHQP ALLPNAAQMP MAALPPPPPD KRRREEEREA NNPPQSPKPP  180
SAEETAAAAA AASAAVKERK EGQRRKQRDE EGLHLLKLLL QCAESVNADN LDEAQTALLE  240
IAELATPFGT STQRVAAYFA EAVSARLVSS CLGLYAPLPH ASPAASRLVN GRVAAAFQVF  300
NGISPLVKFS HFTANQAIQE AFEREERVHI IDLDIMQGLQ WPGLFHILAS RPGGPPRVRL  360
TGLGASMDAL EATGKRLSDF ADTLGLPFEF CPVADKAGNL DPEKLGVTRR EAVAVHWLHH  420
SLYDVTGSDS NTLCLIKRLA PKVVTMVEQD LRHTGSFLAR FVDAIHYYSA LFDSLDASYG  480
EDSPERHVVE QQLLSREIRN VLAVGGPSRT GDVKFGCWRD RLARSGFGAA SLAGSATAQA  540
ALLLGMFPSD GYTLLEENGA LKLGWKDLTL LTASAWRPMH TTSGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.01995783380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000250}.
UniProtProbable transcription factor involved in asmmetric cell division in the cortex/endodermis progenitor cell and in the process of stomata and ligule formation in leaves. {ECO:0000269|PubMed:12974810}.
UniProtTranscription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598270.0AK359827.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1103O07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186306.10.0protein SCARECROW 1-like
SwissprotA2ZHL00.0SCR2_ORYSI; Protein SCARECROW 2
SwissprotQ2QYF30.0SCR2_ORYSJ; Protein SCARECROW 2
SwissprotQ2RB590.0SCR1_ORYSJ; Protein SCARECROW 1
TrEMBLM0Y0N40.0M0Y0N4_HORVV; Uncharacterized protein
STRINGMLOC_64716.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Kamiya N, et al.
    Rice globular embryo 4 (gle4) mutant is defective in radial pattern formation during embryogenesis.
    Plant Cell Physiol., 2003. 44(9): p. 875-83
    [PMID:14519768]
  2. Lim J, et al.
    Conservation and diversification of SCARECROW in maize.
    Plant Mol. Biol., 2005. 59(4): p. 619-30
    [PMID:16244911]
  3. Kaur P, et al.
    Genes controlling plant growth habit in Leymus (Triticeae): maize barren stalk1 (ba1), rice lax panicle, and wheat tiller inhibition (tin3) genes as possible candidates.
    Funct. Integr. Genomics, 2008. 8(4): p. 375-86
    [PMID:18543009]
  4. Sazuka T, et al.
    A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos.
    Plant J., 2009. 60(2): p. 227-41
    [PMID:19682283]
  5. Fan T, et al.
    Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
    PLoS ONE, 2015. 10(5): p. e0125833
    [PMID:26023934]
  6. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  7. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]