PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64018.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 310aa    MW: 33845.9 Da    PI: 6.4382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64018.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.3e-12135183355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  MLOC_64018.1 135 NNHSLAERFRREKINERMKHLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 183
                   58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.11E-12130187No hitNo description
SuperFamilySSF474594.71E-18130199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.847132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-18132199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9135183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MYSPPCTAPG SNGERSFASG AANPLALLDH AMDFDEHVLF PMHNAGMQDG VQFYNHTAGG  60
SGTELSRNMS MEKGLKGGKR KGSGEGSSTM HSQEETGAMS RREASMERAG EKEGDAASNR  120
EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNKITGKAM MLDEIINYVQ  180
SLQRQVEFLS MKLSAVSPEL NCDLDLQDIL CPQDARSAFP GYGQRLGNVH PNGSMFRASQ  240
PGLSRPELYG NGIIIPDPAS VHHMARTAQL PAFPQRSIVW DEELRGIGPV AFPADAGTSS  300
LENSDSMKVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159234.10.0transcription factor bHLH137-like isoform X2
TrEMBLM0XXT50.0M0XXT5_HORVV; Uncharacterized protein
STRINGMLOC_64018.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.32e-44cryptochrome-interacting basic-helix-loop-helix 5