PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64012.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 492aa    MW: 53463.1 Da    PI: 7.8852
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64012.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.8e-1465104242
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                   +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  MLOC_64012.1  65 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 104
                   689*************************.********9875 PP
2TCR50.34.6e-16147186140
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                   k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  MLOC_64012.1 147 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 186
                   589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-1364104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.38365187IPR005172CRC domain
PfamPF036381.2E-1066101IPR005172CRC domain
SMARTSM011146.0E-19147188IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12150185IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MEPGNQQQVQ PPAPPAAQLM APPHPPQPRP VAQVHAVFSS TRQWPMSFTP IKPMVEIKSV  60
TPPKRKKQCN CKNSHCLKLY CECFAAGLYC DGCNCKQCGN KVENEHARQE AINSTKLRNP  120
KAFQPKIENV PSTLSVRKDA GAPSLPKHNK GCHCKKSGCL KKYCECFQAN ILCSKNCKCM  180
DCKNFEGSEE LQAIIQGDNA SDKNSIQQAA NVTLNGAIGS SGYKYSPVRR KRHPEDPLGP  240
EANHFDASQV ASSSGLEGCI GYQSRSKMVY RSPLANTVHP TDVNDLANHL VIACRKATEA  300
FLTIADNKVE MEVERGIHTN ADLNNDSMKN REVQNGVISQ PDVATHIDQR TAGDLESPCG  360
NTQEDYRPAS PGTQALLCDE QGTAFGSDYR TSFPAAFHDQ DTPKLSVLQE KTVLTGLREY  420
LRVIITRGKI NANNSAGMTE ANASSEPAME LDARRNHGAT TGPGVSSLPS EAVERPKAPG  480
DPENPRTSDP SA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-266619611132Protein lin-54 homolog
5fd3_B1e-266619611132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150693.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A453S8840.0A0A453S884_AEGTS; Uncharacterized protein
STRINGMLOC_64012.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.16e-85Tesmin/TSO1-like CXC domain-containing protein