PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61420.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 748aa    MW: 81308.7 Da    PI: 5.6897
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61420.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.6e-214297156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  MLOC_61420.1 42 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSKRLSLDARQVKFWFQNRRTQMK 97
                  678899***********************************************999 PP
2START182.62.2e-572564881206
                   HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S....EEEE CS
         START   1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla....kaet 81 
                   ela +a++elvk+a+ ++p+Wv+        es+n +e+l + +   +     + +ea+r+sg+v+ +    lve+l+d + +W+ ++     ka++
  MLOC_61420.1 256 ELAISAMDELVKMAQTDDPFWVTGLpgfpdkESLNFEEYLHSSQHCIGmkpagFVSEASRESGLVIIDNSlALVETLMDER-RWSDMFScmiaKATI 351
                   57889******************9999999999999999999966655999999***********9876658999999999.*************** PP

                   EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEE CS
         START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtw 166
                   le +s+g      gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d   ++++          ++++lpSg+++++++ng++kvtw
  MLOC_61420.1 352 LEEVSNGiggtrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsattsAGANLKCRRLPSGCVMQDTPNGYCKVTW 448
                   *********************************************************88777776654222358*********************** PP

                   EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                   veh++++++++h+ +r+l++sgla+ga++w+atlqrqce+
  MLOC_61420.1 449 VEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 488
                   **************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2222101IPR009057Homeodomain-like
SuperFamilySSF466893.51E-212399IPR009057Homeodomain-like
PROSITE profilePS5007117.883999IPR001356Homeobox domain
SMARTSM003892.3E-1940103IPR001356Homeobox domain
CDDcd000861.77E-184199No hitNo description
PfamPF000468.7E-194297IPR001356Homeobox domain
PROSITE patternPS0002707497IPR017970Homeobox, conserved site
PROSITE profilePS5084844.77247491IPR002913START domain
SuperFamilySSF559616.59E-29248488No hitNo description
CDDcd088752.71E-109251487No hitNo description
SMARTSM002341.9E-42256488IPR002913START domain
PfamPF018521.5E-49257488IPR002913START domain
SuperFamilySSF559611.26E-21517738No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MARDAEAQND SRSGSDHLDA ISGVGDDDDD AEPSGSNPRK RKKRYHRHTP QQIQELEALF  60
KECPHPDEKQ RGELSKRLSL DARQVKFWFQ NRRTQMKTQL ERHENALLKQ ENEKLRTENL  120
TIREAMRTPM CGGCGSPAML GEVSLEEQHL RIENARLKDE LNRVCTLATK FLGKPVSLLS  180
PLQLQPHLSM PLPNSSLELA VGGIGGIGSM QSSMHGMMSE YAGGASSSMG TVITPARATG  240
SALASMVDID RSVFLELAIS AMDELVKMAQ TDDPFWVTGL PGFPDKESLN FEEYLHSSQH  300
CIGMKPAGFV SEASRESGLV IIDNSLALVE TLMDERRWSD MFSCMIAKAT ILEEVSNGIG  360
GTRNGALLLM KAELQVLSPL VPIREVIFLR FCKQLAEGAW AVVDVSIDGL LSNQNSATTS  420
AGANLKCRRL PSGCVMQDTP NGYCKVTWVE HTEYDEASVH QFYRPLLRSG LAFGASRWLA  480
TLQRQCECLA ILMSSATASP NEQTAISQEG RRSMLKLARR MTENFCAGVS ASSAREWSKL  540
DGATGSIGED VRVMARKSVS EPGEPPGVVL SAATSVWVPI APEKLFDFLR DEQLRAEWDI  600
LSNGGPMQEM ARIAKGHQNG NSVSLLRASA MSANQSSMLI LQETCTDASG SIVVYAPVDI  660
PAMQLVMNGG DSTYVALLPS GFAILPDGPS IGSEHKTGGS LLTVAFQILV NSQPTAKLTV  720
ESVETVNNLI SCTIKKIKTA LQCATPEC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743PRKRKKR
23842RKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629190.0AK362919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011D04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178635.10.0homeobox-leucine zipper protein ROC5-like
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A287UGI60.0A0A287UGI6_HORVV; Uncharacterized protein
STRINGMLOC_61420.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]