PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5666.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | C3H | ||||||||
Protein Properties | Length: 338aa MW: 36917.6 Da PI: 8.5398 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 48.5 | 1.4e-15 | 264 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+yGd+C+FaHg MLOC_5666.3 264 FKTELCNKWEETGACPYGDQCQFAHG 289 79***********************9 PP | |||||||
2 | zf-CCCH | 18.3 | 4.1e-06 | 302 | 327 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ MLOC_5666.3 302 YKTEVCRMVLNGEVCPYGHRCHFRHS 327 9******999966**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-19 | 258 | 296 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-11 | 260 | 295 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.2E-10 | 263 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-12 | 264 | 289 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-8 | 297 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.1E-12 | 297 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-5 | 301 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.807 | 301 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051511 | Biological Process | negative regulation of unidimensional cell growth | ||||
GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis | ||||
GO:0003729 | Molecular Function | mRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MQEALVSPAN ADRLRSAFEL KPYAFGDQRL SSSPRYLPSG DDGLYRCSSP FSPSLGFSSP 60 SPLATSVSLS PSSSGSLVDD GDYDGAAAAD ATGHRLQLAR LALQYQEVAD RYEMCLSHLA 120 EAVDEAAVLR RENTELRVAN SDLARRVALL GGKETAAVVI ADEIRRFRLG EHKASKQRAP 180 EKLAVLPKSI SVRSNDYLKM NQAAPAAATP PAYSRKPRAA NVNPSPVTQR AYLGLGVDGG 240 KKGEEHKAKQ DAAGELDVYN QGMFKTELCN KWEETGACPY GDQCQFAHGV SELRPVIRHP 300 RYKTEVCRMV LNGEVCPYGH RCHFRHSLTA AERLLRSR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1rgo_A | 6e-23 | 264 | 327 | 4 | 67 | Butyrate response factor 2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5666.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360544 | 0.0 | AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020154780.1 | 0.0 | zinc finger CCCH domain-containing protein 9-like isoform X1 | ||||
Swissprot | A2ZVY5 | 1e-134 | C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9 | ||||
TrEMBL | A0A287L6N6 | 0.0 | A0A287L6N6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5666.3 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2775 | 37 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 7e-61 | C3H family protein |