PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56050.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 1265aa    MW: 140529 Da    PI: 4.7373
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56050.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-08657679527
                   --SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   +C+ ++  GtC yG++C+F+H+p
  MLOC_56050.2 657 NCPSYMSKGTCTYGPSCHFNHPP 679
                   7********************96 PP
2zf-CCCH35.22.1e-11717739426
                   ---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                   ++C++++rtG C+yG +C+F+H+
  MLOC_56050.2 717 RNCDYYMRTGACRYGKNCHFNHP 739
                   79********************9 PP
3zf-CCCH23.21.2e-07910936127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++ +C+f ar+G Ck+ + Ck++H++
  MLOC_56050.2 910 PGRQECPFLARYGDCKFASACKYHHPK 936
                   57899********************96 PP
4zf-CCCH28.72.2e-09950976127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++ C+f++r+G Ck+ + C+++H++
  MLOC_56050.2 950 PGRPDCPFYMRFGDCKFASACNYHHPK 976
                   689**********************96 PP
5zf-CCCH36.58.2e-129851010227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHgp 27  
                     +++C+f+++ G+Ck+G++CkF H++
  MLOC_56050.2  985 EEPECPFYMKRGFCKFGAQCKFYHPE 1010
                    5799********************96 PP
6zf-CCCH21.25.1e-0710811107127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    1 yktelCrffartGtCkyGdrCkFaHgp 27  
                    ++++ Cr+++++G Cky + C F+H++
  MLOC_56050.2 1081 PGQPDCRYYMQFGKCKYLSACIFHHPK 1107
                    5789*********************96 PP
7zf-CCCH26.88.7e-0911321156327
                    S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH    3 telCrffartGtCkyGdrCkFaHgp 27  
                    ++ C+f++++G C++G+ C F H++
  MLOC_56050.2 1132 MPDCPFYMKSGKCQFGSLCEFRHPK 1156
                    789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.7E-4652679IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192652680IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-7657679IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-5658678IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6713740IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601713741IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6716741IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9717739IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4719739IPR000571Zinc finger, CCCH-type
SMARTSM003560.32909936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.784909937IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4911936IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028949976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483949977IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-6950976IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-79831010IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8929831011IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-99851010IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-59871011IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-49891010IPR000571Zinc finger, CCCH-type
SMARTSM003560.006610801107IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.51610801108IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-410821107IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-411291156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.48811291157IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-611321156IPR000571Zinc finger, CCCH-type
SMARTSM003560.0711971224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.63411971225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1265 aa     Download sequence    Send to blast
MDDRHPHPHR DTSLVHHHHL KVADAPIHDD DHHLKVADAP IHDDDHHLKL LDATAPPTPR  60
DHAIAAAAAH QQQELPTHGL PTGSTRDNRA VQPQEVQLEQ GVVALAGVGL ATQDDTAVDR  120
DATIHDHNYA IAVDAHHQEQ VKPLLEQCTS TSTSCEDLGT PAMDNDDDAV QLQEVMEQQH  180
ATHPRDEYIA AEEQSEMLDR ELGSTEKADA VPVQEAAEQG LVGTDGESAD ATAVDGHDMA  240
VEQCVTCHDL GTTTENDGAK DDQEQGVIDQ GDAAIDGDND VKHHKVLVPG AVEGTHTSSD  300
DIAVEDQGKN VEQCTTYDVL GTTMKNDDAI AVDDQQVVEQ GVVDLTTIDD DPSVEEQEVV  360
EQGVVDLTTM DDDPSVEEQE VVEQGVVDLT TMDDDPSVED HEVLQQGIIG GTVDIAVQKQ  420
EKPLEQCSRA TKDEYTAKEK EMVVEQGVID PKYMDIAMED QDKLLIIDDQ DTVPMDDIVV  480
KDHDKAVVEY ASDAIVSIKD ESPVEEHDTV GSQGVIDKNG RTKDDIDVEG HGYVKELVII  540
DKWGTSSDAA ALEGQKNETE PCIGDEQIAG KDMDGVHAEA NMLEQMTGDK QGATLSDFAV  600
DKHKDVVERV RHEWGAPEND LAMDTAAYQG TRDWGIVNKE KYRAPARRYP QKPRKLNCPS  660
YMSKGTCTYG PSCHFNHPPQ FNAKTNDSWR PSERRDHGAA EILELNRLGL PIREGARNCD  720
YYMRTGACRY GKNCHFNHPD HVIDARFSSP TGWEDNALET EKSSDHALTE ASHMKKASDD  780
ATLNDRSHLK KSSDGATLDD RSHLNKSSDN ATLDDRSHLK RSSDGATVDD TSYSKKSSDH  840
DTSSTSGVLP PSIFRMLLPP QKVLPSTEGK AKKKSDWSSA SDDSDGCCSA DSSDGPLCKQ  900
EEHVDYPERP GRQECPFLAR YGDCKFASAC KYHHPKQSKD KEQVNYPERP GRPDCPFYMR  960
FGDCKFASAC NYHHPKDKYP TGLPEEPECP FYMKRGFCKF GAQCKFYHPE DANPTMQSPT  1020
DAKISVTMDK HHPSTRITPE DHVPQQPQYP ERRSVTTDDH HPSIRITPEV LPQQPQYPER  1080
PGQPDCRYYM QFGKCKYLSA CIFHHPKDRL AAMWSPSDPA HSDQIGPKIH GMPDCPFYMK  1140
SGKCQFGSLC EFRHPKDIYS TTEEAFGERT GSGAYDSLTR SDNGVEQQEG SVMYPERPGE  1200
PECAHYMRQG YCKFQMNCKY HHPGDRLSKK PTTRLATELV RTGHLSKAGT RWLPHECYQR  1260
RAALS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56050.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3692020.0AK369202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2086J19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181184.10.0uncharacterized protein LOC109766829
TrEMBLA0A287GU970.0A0A287GU97_HORVV; Uncharacterized protein
STRINGMLOC_56050.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147291820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.13e-46zinc finger nuclease 3