PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_5098.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 301aa    MW: 32396.3 Da    PI: 7.4333
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_5098.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd+ l  +v+ +G++ +W + +r++g++R++k+c++rw++yl
      MLOC_5098.1 14 KGPWAAEEDDVLRAYVADHGTPgNWIALPRKIGLNRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding41.33.5e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd l+  +    G++ W+tIa+ ++ gRt++++k++w++
      MLOC_5098.1  69 GGFTDEEDRLICSLYVSVGSR-WSTIAAQLP-GRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.109962IPR017930Myb domain
SuperFamilySSF466892.0E-2511109IPR009057Homeodomain-like
SMARTSM007174.2E-111364IPR001005SANT/Myb domain
PfamPF002491.1E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221569IPR009057Homeodomain-like
CDDcd001674.65E-81662No hitNo description
PROSITE profilePS5129421.57163117IPR017930Myb domain
SMARTSM007171.6E-1167115IPR001005SANT/Myb domain
PfamPF002493.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2270117IPR009057Homeodomain-like
CDDcd001674.18E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGRAPCCDKA SVKKGPWAAE EDDVLRAYVA DHGTPGNWIA LPRKIGLNRC GKSCRLRWLN  60
YLRPNIRHGG FTDEEDRLIC SLYVSVGSRW STIAAQLPGR TDNDVKNYWN TKLKRRLLGG  120
GRRPIRYALP HLQPQPRLLL ASPTGGGAST ALERMQLSVQ RRHVGLQDTP GLPLYGNLWP  180
AQQSVLSPAA GYSGFWSHIQ DHQRTWGSGG TMPLSTSPTG ETAVGVGSSS STPAASSVTF  240
DGDMEDEIEM LLQQIGCLEE EGSGQLIAGE AADDGSAGSW SSCSTPGVDS VFQGYVQGQG  300
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_5098.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0632601e-129BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186746.11e-180transcription factor MYB36-like
SwissprotQ9FKL28e-71MYB36_ARATH; Transcription factor MYB36
TrEMBLM0WFE30.0M0WFE3_HORVV; Uncharacterized protein
STRINGMLOC_5098.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132652632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-67myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]