PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_49594.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 511aa    MW: 54929.8 Da    PI: 8.7099
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_49594.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like986.7e-3197150255
       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                   prlrWtp+LH +F++ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+
  MLOC_49594.1  97 PRLRWTPDLHMAFLHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 150
                   8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5693153IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2893151IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1495151IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-2297152IPR006447Myb domain, plants
PfamPF002491.0E-898149IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGEVKEKEAL AEILEDHRKG SSDDSVPRAG LDLNEGFSEE SDQGEDGEEN DDDDGRSSSN  60
NNSANHESES SRGRHDKAEG SGDRVPTVRQ YNRSKHPRLR WTPDLHMAFL HAVERLGGQE  120
RATPKLVLQM MNVRGLSIAH VKSHLQMYRS KKIEHESSHE RAAISSVFSP MNFHMRRGDH  180
PFHDMFFQRA AGSTLSSRFN DGGVFAPRNA ALPDASRIYG LLQRRQPPLQ TFDFKNSTSL  240
RNQEWAFSQH AAAARARAVN DNGPGKGLIH EMIFRKDGKP TAHLFDVRDV VAPSGMSSPS  300
TTTTSPADLR SDGPKIGSIN WIGSSSRPLS KTMSATGLEQ GVHAQLPFRW RGAAGSNGCH  360
PNGNTAGRTT SSSDPVVTCA AGSPLLLPKQ GVPRAPAKAT EETSIGAEAR RTKTSAAVEE  420
NGWTPELQLS LSPNAGADTG GRGKKRNSAG QEVSSDKVPL SLSLALHGGV VDDDGGGRDG  480
RRLEVATGSS SKKAALGLST LDLTMSIKAL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1798152357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_49594.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0736061e-115AK073606.1 Oryza sativa Japonica Group cDNA clone:J033048N17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172017.10.0uncharacterized protein LOC109757605
TrEMBLM0WDF90.0M0WDF9_HORVV; Uncharacterized protein
STRINGMLOC_49594.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27543686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-33G2-like family protein