PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_43934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 401aa MW: 43567.8 Da PI: 5.2766 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 84 | 3.1e-26 | 62 | 205 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgy.. 82 lp+G++F+Ptd el+ e+L+ kv + ++ + +i+e+ +i++++P++Lp +k + ++ +fF k +++ gkrk+r+ + +g MLOC_43934.1 62 LPAGVKFDPTDLELL-EHLEGKVGRAAshehIDDFItTIEEAeGICYTHPENLP-GIKVDGSNNHFFNKISNAFDVGKRKRRKisnsdhtVCDGHfr 156 799************.99****9888755443332325888878**********.667788999******************856666652244345 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128 W++tgk+k++l+++g +g kk+Lv++ g+++ g +W mh+y+l MLOC_43934.1 157 WHKTGKSKSILDNNGVIKGWKKILVLHMGSKKGGDedeIFNWRMHQYHL 205 ***************************88887776222579******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-29 | 51 | 224 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.412 | 62 | 224 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-11 | 63 | 205 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MASAAFKGSV IDSTASRCKL FIRSLITIIA AVIKNPTHPP PSQIECPNCK YHIDVLSQWP 60 GLPAGVKFDP TDLELLEHLE GKVGRAASHE HIDDFITTIE EAEGICYTHP ENLPGIKVDG 120 SNNHFFNKIS NAFDVGKRKR RKISNSDHTV CDGHFRWHKT GKSKSILDNN GVIKGWKKIL 180 VLHMGSKKGG DEDEIFNWRM HQYHLGVDQD ENHGELVASK VFRQSKKAGQ SVMCTVNEES 240 DSFAGEIDPT TPITYPPQPR PPNSSPSRTK QNQEEDAALY GPDERPSRGA TPEAAYPEMQ 300 SPPLDADAFQ GLPDPGTPPG FSLMASWLGG SSSLAVEVAP LSGLDERLSR GGTPDAAYPE 360 AEGQPLPLDA EAIQEFTDPG TPPDSFLGMQ LGSQGIGWPA C |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 141 | KRKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_43934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187626.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
TrEMBL | A0A287INH5 | 0.0 | A0A287INH5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_43934.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 4e-55 | NAC domain containing protein 73 |