PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_43396.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 292aa    MW: 30090.6 Da    PI: 8.6035
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_43396.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000521812191154
                   HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   +R +++ +++  L++l+ +      +K + a++L +A  +I+sL
  MLOC_43396.1 181 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRSL 219
                   7899999**********999.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.515170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-8181229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.2E-5181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDEILRAAAG SSLIATTMWN CPAHSSLLLP IGDDHVAVKC ESSSSAAGSS AGFDGIRLAA  60
DYGHLCHHMS TLQNLPAPPL FATRSSESYF GMGDGSVYGG GDGRPAAFMH FGYTQTQPPT  120
AATHPVRWTA AGGQTMVSDG SSFSGSKRRK TATTAHGPHG RLQGSSAKPR NNTAAAKAPC  180
KRSQKLGDKI TALQQLVSPY GKTDTASVLH EAAACIRSLH DQIQILAAPY PGESSSSPSS  240
SQDAGEEPAT GLRRRGLCVA PLSPAVASLV SGAARDHGRA HADVGGAWFT AL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_43396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180445.11e-151transcription factor bHLH123-like
TrEMBLA0A453ICW91e-160A0A453ICW9_AEGTS; Uncharacterized protein
STRINGMLOC_43396.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37582426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.18e-24bHLH family protein