PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_38822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 267aa MW: 29242.2 Da PI: 10.264 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 94.2 | 8.9e-30 | 49 | 149 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT............---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+ tpsdv+k++rlv+pk++ae+h +++ l + d +g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F+ MLOC_38822.1 49 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsasaavP---GecKGVLLNFDDATGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVEFY 142 89***************************8887776652...144889************************************************* PP E-SSSEE CS B3 84 ldgrsef 90 + + + MLOC_38822.1 143 RAASGNN 149 6654443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-40 | 41 | 167 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-30 | 46 | 156 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.54E-27 | 47 | 143 | No hit | No description |
PROSITE profile | PS50863 | 13.296 | 49 | 159 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-26 | 49 | 152 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.4E-20 | 49 | 161 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MLRKHIYPDE LAQHKRAFFF AAASSPTSSS SPLASPAPSA AAARREHLFD KTVTPSDVGK 60 LNRLVIPKQH AEKHFPLQLP SASAAVPGEC KGVLLNFDDA TGKVWRFRYS YWNSSQSYVL 120 TKGWSRFVKE KGLHAGDAVE FYRAASGNNQ LFIDCKLRSK STTTTTSVNS EAAPSPAPVT 180 RTVRLFGVDL LIAPAARHAH EHEDYGMAKT NKRTMEASVA APTPAHAVWK KRCVDFALTY 240 RLATTPQCPR SRDQLEGVQA AGSTFAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-51 | 46 | 161 | 11 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_38822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371941 | 0.0 | AK371941.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143K20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159691.1 | 1e-142 | AP2/ERF and B3 domain-containing protein Os05g0549800-like | ||||
Swissprot | Q8RZX9 | 7e-83 | Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400 | ||||
TrEMBL | A0A287GHY7 | 0.0 | A0A287GHY7_HORVV; Uncharacterized protein | ||||
TrEMBL | F2E717 | 0.0 | F2E717_HORVV; Predicted protein | ||||
STRING | MLOC_38822.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP25161 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 9e-61 | related to ABI3/VP1 2 |