PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_33371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | GRAS | ||||||||
Protein Properties | Length: 107aa MW: 11504.4 Da PI: 9.4568 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.6 | 1.2e-11 | 7 | 105 | 2 | 91 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn......sseelaalkl....fsev 87 ++lL cA av++++l+++q+l l ela+ +gd+++Rlaay ++AL+ rl ++ ++a+++ ++ e + +l+ + f+ev MLOC_33371.1 7 EQLLGPCAVAVEARNLSRVQHLFYVLGELAAFSGDANHRLAAYGLRALSLRLPAaVGPAAAAAVRVPAACECPtpsfagAEPRLFR--AslikFHEV 101 68999***********************************************9845555555554433332222333322222222..123566676 PP GRAS 88 sPil 91 P+l MLOC_33371.1 102 RPWL 105 6666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 12.416 | 1 | 107 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.3E-9 | 7 | 105 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
RDARWAEQLL GPCAVAVEAR NLSRVQHLFY VLGELAAFSG DANHRLAAYG LRALSLRLPA 60 AVGPAAAAAV RVPAACECPT PSFAGAEPRL FRASLIKFHE VRPWLTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_33371.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167481.1 | 1e-50 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 7e-30 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A287J9V6 | 3e-66 | A0A287J9V6_HORVV; Uncharacterized protein | ||||
STRING | MLOC_33371.1 | 9e-70 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6135 | 28 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-26 | GRAS family protein |
Publications ? help Back to Top | |||
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