PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_15776.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 331aa MW: 36526.2 Da PI: 9.7025 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 380.3 | 3.2e-116 | 1 | 331 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalll 86 md+ g+re r++ y+ p++++k++ +++l+++++erd++i er++al+ekkaa+aerdmaf+qrd+a+aern+a+verdn+l+al+l MLOC_15776.1 1 MDNVGHREdgRQRQdSYKalhtqwmmPQRQMKDHHSMNLLALMSERDNAIMERDHALAEKKAAMAERDMAFAQRDSAMAERNAAIVERDNALAALEL 97 89999998898887788889999998889******************************************************************99 PP GAGA_bind 87 vensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpieeaaee.akekkkkkkrqrakkpkekkak..kkkkks 171 ++++ + ++++ ++l+g+k+ ++++q+ + ql+d +++ +re+++++a+pi++a+ + a ++kk+kk++++ +p+++ + +k+kk MLOC_15776.1 98 ARTNGFnmnNGNGFNPGSLNGAKNFHHHDQQPHaqslpLQLADAPYDhAREMHISDAYPISTAPVSaAGKAKKPKKNSSQGSPLKRPSGvlRKTKKA 194 88875545578888899***********99888889999********9*************9976615789999***********999988788889 PP GAGA_bind 172 ekskkkvkkesader.......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmS 261 + ++++v ++ e+ +k+e+k++dl+ln+vs+Des++P+P+CsCtG+lrqCYkWGnGGWqS+CCt+++S yPLPv++++r+aR++grKmS MLOC_15776.1 195 AGDWRDVGISGGGEDpahvasvMKNEWKDQDLGLNQVSFDESSMPAPACSCTGVLRQCYKWGNGGWQSSCCTMSMSLYPLPVMPNKRHARMGGRKMS 291 999***9998866556789999*************************************************************************** PP GAGA_bind 262 qgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++af+klL++LaaeG+dls vDLkdhWAkHGtn+++tir MLOC_15776.1 292 GSAFTKLLSRLAAEGHDLSASVDLKDHWAKHGTNRYITIR 331 ***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 3.4E-149 | 1 | 331 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 5.1E-96 | 1 | 331 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MDNVGHREDG RQRQDSYKAL HTQWMMPQRQ MKDHHSMNLL ALMSERDNAI MERDHALAEK 60 KAAMAERDMA FAQRDSAMAE RNAAIVERDN ALAALELART NGFNMNNGNG FNPGSLNGAK 120 NFHHHDQQPH AQSLPLQLAD APYDHAREMH ISDAYPISTA PVSAAGKAKK PKKNSSQGSP 180 LKRPSGVLRK TKKAAGDWRD VGISGGGEDP AHVASVMKNE WKDQDLGLNQ VSFDESSMPA 240 PACSCTGVLR QCYKWGNGGW QSSCCTMSMS LYPLPVMPNK RHARMGGRKM SGSAFTKLLS 300 RLAAEGHDLS ASVDLKDHWA KHGTNRYITI R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_15776.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374870 | 0.0 | AK374870.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3078K14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158993.1 | 0.0 | barley B recombinant-like protein D | ||||
Refseq | XP_020158994.1 | 0.0 | barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | F2EFE4 | 0.0 | F2EFE4_HORVV; Predicted protein | ||||
STRING | MLOC_15776.4 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 2e-98 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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