PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_10815.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 205aa    MW: 22374.3 Da    PI: 7.273
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_10815.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-073312255
                  HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   L++l+P++      K +Ka++L +A+eY+k+Lq
  MLOC_10815.1  3 ALQSLIPNS-----NKTDKASMLDEAIEYLKQLQ 31
                  799999997.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.8E-11141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.131130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-8135No hitNo description
SuperFamilySSF474591.19E-10241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-5331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKALQSLIPN SNKTDKASML DEAIEYLKQL QLQVQMLSMR NGVYLNPSYL SGALEPVQAS  60
QMFAALGASG RNVAAPSSGA VAPPVNQSSG AHLSFDPMNS PQQNQPQPLV LASCPKTTIP  120
EPPFHLESSQ SHLQSFQLPE SSQMMLRGDI MLKHHLTSAQ ERADPPGNKM NSLRQESTML  180
NTHFDGCSRS KEQSHDMVPA NTRHV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_10815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3747870.0AK374787.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3076F24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169799.11e-138transcription factor PIF3-like
RefseqXP_020169800.11e-138transcription factor PIF3-like
TrEMBLA0A287VS991e-148A0A287VS99_HORVV; Uncharacterized protein
TrEMBLA0A287VSP51e-148A0A287VSP5_HORVV; Uncharacterized protein
STRINGMLOC_10815.31e-148(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.17e-25bHLH family protein