PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C025099P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 656aa MW: 73806.1 Da PI: 4.6995

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C025099P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.2	1.3e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v MELO3C025099P1 6 LPPGFRFHPTDEELVAYYLKRKINGREIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g +tdWvmheyrl MELO3C025099P1 100 S-QSRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-64	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	62.249	6	157	IPR003441	NAC domain
Pfam	PF02365	5.1E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 656 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH 120 GARTDWVMHE YRLDDRECEV ASSGLQDAYA LCRVFKKSAT IAPKIEDNHP YSNMTSSSNH 180 FMNSSDQSSE PESSNYSMPL DAFQCQSQSQ SQSHMVNKDC NSFDMFGGAR ETKWSQFLSQ 240 EAFNSAPSFP SYANIPYPPS KVDIALECAR LQHRFTMPPL EVEDYPHTSY SDHFKTQQPR 300 NPTMLGGSSN ASTDILQEIL SVAQASQQLA NQSCSVDATT WDGGLANNNN NNNNNVYACS 360 SNDQDFAFMA AKDGFQDWKS AVTFDAESSW EDPYSKCIDV GNVGDDIAVE NLRWVGMSSK 420 DLDKNCMEDS KLVPIENISN FQIEDHQNQL QDQSIAINDE MNDFSLAFIN EDIPNPNNYD 480 MEGSDNTMVN YSSSPSFEVV EEIKVNHGLF ISTRQVAETF FHQTIPSETV KVQSLNSNFM 540 APNFISLHEI TPQKTPSSFL LCGSSLKKPW NNFQRKIISI LELLLIFIVY SDEEGEEEGK 600 VNSNSGDEGE NLLSEDEECR SKGKKKGALN MILKKAGIFF SIASLAVCTI WANYI*

Sequence ? help Back to Top

Protein Sequence Length: 656 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING REIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QSRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDDRECEV ASSGLQDAYA LCRVFKKSAT IAPKIEDNHP YSNMTSSSNH  180
FMNSSDQSSE PESSNYSMPL DAFQCQSQSQ SQSHMVNKDC NSFDMFGGAR ETKWSQFLSQ  240
EAFNSAPSFP SYANIPYPPS KVDIALECAR LQHRFTMPPL EVEDYPHTSY SDHFKTQQPR  300
NPTMLGGSSN ASTDILQEIL SVAQASQQLA NQSCSVDATT WDGGLANNNN NNNNNVYACS  360
SNDQDFAFMA AKDGFQDWKS AVTFDAESSW EDPYSKCIDV GNVGDDIAVE NLRWVGMSSK  420
DLDKNCMEDS KLVPIENISN FQIEDHQNQL QDQSIAINDE MNDFSLAFIN EDIPNPNNYD  480
MEGSDNTMVN YSSSPSFEVV EEIKVNHGLF ISTRQVAETF FHQTIPSETV KVQSLNSNFM  540
APNFISLHEI TPQKTPSSFL LCGSSLKKPW NNFQRKIISI LELLLIFIVY SDEEGEEEGK  600
VNSNSGDEGE NLLSEDEECR SKGKKKGALN MILKKAGIFF SIASLAVCTI WANYI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-56	2	157	11	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681894	0.0	LN681894.1 Cucumis melo genomic scaffold, anchoredscaffold00074.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008463166.1	0.0	PREDICTED: NAC domain-containing protein 45
Swissprot	A4VCM0	1e-108	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1S3CK50	0.0	A0A1S3CK50_CUCME; NAC domain-containing protein 45
STRING	XP_008463166.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-150	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]