PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C024989P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 314aa    MW: 33141.1 Da    PI: 9.979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C024989P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19137186255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++ a+++++g
  MELO3C024989P1 137 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDGAALRFRG 186
                     7********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.818137194IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22137195IPR016177DNA-binding domain
SMARTSM003804.5E-37137200IPR001471AP2/ERF domain
PfamPF008472.2E-13137186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-33137195IPR001471AP2/ERF domain
PRINTSPR003677.0E-12138149IPR001471AP2/ERF domain
CDDcd000181.13E-18145196No hitNo description
PRINTSPR003677.0E-12160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MCYLKVANQG GGDGDGDGDE LEGMLSSSAG ELMAMVSALT RVISGGSAAP ATVGGCRKRG  60
REEEGESRIM WERGVGRGNR GGIVDSTAMQ SFSMPSPPIF LKEGGSSSSN SISIMTAPTT  120
APTMTATFSG ENRIRRRYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFDTA EAAARAYDGA  180
ALRFRGSKAK LNFPELVSVF PPSSLQSATH LASSPVVVPP QDAVGNYLQY SHMFPNSRET  240
SSQAVPAFER MLCNSTSVNP SPLVSSSGVS NFPFPFSPQQ LRHYGPPKNQ SQGGGGSSMP  300
SSTGFSYRPP ASG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22136198467ATERF1
3gcc_A1e-22136198467ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818180.0LN681818.1 Cucumis melo genomic scaffold, anchoredscaffold00073.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463062.10.0PREDICTED: ethylene-responsive transcription factor ERF110
TrEMBLA0A1S3CIC70.0A0A1S3CIC7_CUCME; ethylene-responsive transcription factor ERF110
STRINGXP_008463062.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2447633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.11e-21ERF family protein