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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C024989P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | ERF | ||||||||
Protein Properties | Length: 314aa MW: 33141.1 Da PI: 9.979 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a++ a+++++g MELO3C024989P1 137 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAARAYDGAALRFRG 186 7********.**********93....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.818 | 137 | 194 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-22 | 137 | 195 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-37 | 137 | 200 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-13 | 137 | 186 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-33 | 137 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.0E-12 | 138 | 149 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-18 | 145 | 196 | No hit | No description |
PRINTS | PR00367 | 7.0E-12 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MCYLKVANQG GGDGDGDGDE LEGMLSSSAG ELMAMVSALT RVISGGSAAP ATVGGCRKRG 60 REEEGESRIM WERGVGRGNR GGIVDSTAMQ SFSMPSPPIF LKEGGSSSSN SISIMTAPTT 120 APTMTATFSG ENRIRRRYRG VRQRPWGKWA AEIRDPQKAA RVWLGTFDTA EAAARAYDGA 180 ALRFRGSKAK LNFPELVSVF PPSSLQSATH LASSPVVVPP QDAVGNYLQY SHMFPNSRET 240 SSQAVPAFER MLCNSTSVNP SPLVSSSGVS NFPFPFSPQQ LRHYGPPKNQ SQGGGGSSMP 300 SSTGFSYRPP ASG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 136 | 198 | 4 | 67 | ATERF1 |
3gcc_A | 1e-22 | 136 | 198 | 4 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681818 | 0.0 | LN681818.1 Cucumis melo genomic scaffold, anchoredscaffold00073. | |||
GenBank | LN713257 | 0.0 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008463062.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF110 | ||||
TrEMBL | A0A1S3CIC7 | 0.0 | A0A1S3CIC7_CUCME; ethylene-responsive transcription factor ERF110 | ||||
STRING | XP_008463062.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF24476 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61890.1 | 1e-21 | ERF family protein |