PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

MELO3C024387P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 289aa MW: 32397.2 Da PI: 5.6061

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C024387P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127	9.1e-40	33	132	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k+l++ e+e+am+++++++++r dPv G++++i++lq+q+e kael+ MELO3C024387P1 33 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELE 127 7*********************************************************************************************9 PP DUF260 96 llkee 100 + ++ MELO3C024387P1 128 IVLHQ 132 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.293	32	133	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-37	33	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MSPITHHHHN HHHHLSKSST APVTTTTSST TQACAACKYQ RRKCAPDCIL APYFPHDRQR 60 QFLNAHKLFG VSNITKIIKN LDPFEKEEAM RTIIFQSDVR SVDPVGGCYR IIRDLQRQIE 120 YNKAELEIVL HQLAICKQQA AAAAAAAAAA AILEGDPMSG YSGIEHQFVE GYEGEGFVVG 180 ENENGESLED QEVEVWGIQD SSCSSLQLKQ AGSVHDFHDI KIDDNNQQHQ QQLKFQIDHH 240 DLVHRSEEPM LKMDNMILKE DSDPIQQVQD QELKGAIDTL FTFPTCDT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-28	26	127	4	105	LOB family transfactor Ramosa2.1
5ly0_B	4e-28	26	127	4	105	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681805	0.0	LN681805.1 Cucumis melo genomic scaffold, anchoredscaffold00067.
GenBank	LN713255	0.0	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016902828.1	1e-160	PREDICTED: LOB domain-containing protein 22, partial
Swissprot	Q9LRW1	2e-54	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A0A0K9M3	1e-167	A0A0A0K9M3_CUCSA; Uncharacterized protein
STRING	XP_008462351.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4133	32	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-55	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]