PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C023880P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LBD

Protein Properties

Length: 222aa MW: 24271.1 Da PI: 4.1797

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C023880P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.3	1.9e-36	12	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++Cv+ap f ++ +++fa+vhk+FGasnv+kll +lp+++r++a+ +++yeA r+rdP yG++++i++lqq++ +l++e+ MELO3C023880P1 12 SCGACKFLRRKCSDQCVFAPFFSYDEaTSHFAAVHKVFGASNVSKLLLHLPTHTRSHAAITVAYEALERMRDPTYGCIAHIFALQQEVVSLQEEI 106 6********************98868***************************************************************** PP DUF260 95 allkee 100 + l+++ MELO3C023880P1 107 EILGSQ 112 999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.875	11	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-34	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MTGLNSSTTS SSCGACKFLR RKCSDQCVFA PFFSYDEATS HFAAVHKVFG ASNVSKLLLH 60 LPTHTRSHAA ITVAYEALER MRDPTYGCIA HIFALQQEVV SLQEEIEILG SQIANLATTG 120 GSIAAVENPF IDQVVQVSQQ MDGFEMTNTN YYQNELASEL PYQSFDNIQN DNTAQMISPL 180 FCLGEEDGVF EFCNSNNVVE STSAFDVSVE ENCVGYPWIV G*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-31	5	117	4	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-31	5	117	4	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681897	0.0	LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461694.1	1e-165	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9LHS8	5e-58	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A1S3CGM1	1e-164	A0A1S3CGM1_CUCME; LOB domain-containing protein 33-like
STRING	XP_008461694.1	1e-165	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-60	LOB domain-containing protein 33

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]