PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C023532P4
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 421aa    MW: 46613.4 Da    PI: 8.4133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C023532P4genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.4e-13355400655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri +++ +L+el P      +k  s a++Le+AveYIk Lq
  MELO3C023532P4 355 SIAERMRRTRISERIKKLQELFPDM----DKQTSTADMLELAVEYIKGLQ 400
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.24349399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-14352413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.47E-11353404No hitNo description
Gene3DG3DSA:4.10.280.101.5E-13354410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12355405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10355400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MSLLYSTNFK FSNDEMKKYP DFMDCDSTNN HHSQQEHNNS GGLMRYCSAP NSLFASLVDG  60
TEGFNSSNNG GGSREDYRFI RSSSPEVEVI LSRFMASCNG KFDSGSGERT VKEETGEPVR  120
QQNGFCNQSS SMVNTSSVDS GGRAQIGNSY GVMNSSDFDN SMQSQLGARN CSNLFRQSSS  180
PAGFFSHLTA ENGNTTREVD KFGTCNRKDV NAAYPSTRIG SQMNLSGHSF GSNHMPPIAE  240
EENKSIGIVS SSRHRQKANS GDRLQTDDFL NSSWDNSAMR DIKRGRDNNG HAFSTSIVLK  300
TQQNADSGNN IRGLAHHLSL PISFNKDPVE KYLRFQEPVP HQIRAKRGCA THPRSIAERM  360
RRTRISERIK KLQELFPDMD KQTSTADMLE LAVEYIKGLQ RQVKTLTDTK AKCTCSCSSQ  420
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461267.10.0PREDICTED: transcription factor bHLH130-like isoform X1
TrEMBLA0A1S3CEB20.0A0A1S3CEB2_CUCME; transcription factor bHLH130-like isoform X1
STRINGXP_008461266.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-53bHLH family protein