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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MELO3C022316P1 |
Common Name | LOC103498850 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family |
MIKC_MADS |
Protein Properties |
Length: 243aa MW: 27773.7 Da PI: 8.8257 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MELO3C022316P1 | genome | MELONOMICS | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.8 | 1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
MELO3C022316P1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 94.7 | 1.5e-31 | 86 | 174 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
ea + s+qqe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qL+ slk+iRs++++++l+q+ +lq+ke+ l+e+nk+L+++l
MELO3C022316P1 86 EALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELENLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLV 174
4555689******************************************************************************9875 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.32E-46 | 2 | 76 | No hit | No description |
SuperFamily | SSF55455 | 1.01E-33 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 15.21 | 89 | 185 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 5.8E-26 | 91 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001708 | Biological Process | cell fate specification |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010093 | Biological Process | specification of floral organ identity |
GO:0048481 | Biological Process | plant ovule development |
GO:0048833 | Biological Process | specification of floral organ number |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKCNYGAPEP NVSTREALEL SSQQEYLKLK ARYEALQRSQ RNLLGEDLGP 120 LSSKELENLE RQLDMSLKQI RSTRTQYMLD QLTDLQRKEH LLNEANKTLK QRLVEGYQVN 180 ALQLNQSADD MMYGRQQAQP PGDAFFHPLD CEPTLQIGYQ PDPITVVTAG PSMNNFLPGW 240 LP*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 7e-48 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-48 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-48 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-48 | 75 | 176 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC405564 | 0.0 | KC405564.1 Cucumis melo sepallata 3-like MADS-box protein mRNA, complete cds. |