PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C022233P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | bHLH | ||||||||
Protein Properties | Length: 491aa MW: 52510.8 Da PI: 6.8636 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.9 | 2.4e-15 | 308 | 353 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq MELO3C022233P1 308 HNQSERKRRDKINQRMKTLQKLVPNS-----NKTDKASMLDEVIEYLKQLQ 353 9************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.4E-19 | 301 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.593 | 303 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.44E-17 | 308 | 357 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-18 | 308 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-13 | 308 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-18 | 309 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MSQCVPNWDL SEPPPSSAAT GRPPFHSSSA ADDVVPLFEY EVAELTWENG QLAMHGLGLP 60 RVTGKVQNSG GGGGGGGVGS KFTWDNKPAR ASGTLESLVN QGTRHGKNNI SFDINTDDTA 120 HGGANDLAPW FSDHHRQTTT ASTADAMVPC DGDKSATAGG SAAKSSDIPV VAREEDEDCG 180 VIHGKRGRVV ARVVHASGEW STCRNQISVS GNRESGQKVT LNSTRVRNFA AVDGSVGFTA 240 TTATSQGSLD NTTSDKPCVK NTTVTTTDDH DSVCHSTHQV EEEDEGDRKK ENAKSSVSTK 300 RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSNKTDKAS MLDEVIEYLK QLQAQVQMMS 360 RMNMPMMLPM AMQQQLSMAP LMAPMGLGMG MGGMGMPLGM DHLNMLAGRS GLTAGMSPLL 420 HPTAFMPIPT WDGGTCTDQL QHSPTTMVAD PFSTFLACQQ QPMTMEAYNR IATMLQQLHQ 480 HTPTVGGSKN * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 311 | 316 | ERKRRD |
2 | 312 | 317 | RKRRDK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00034 | PBM | Transfer from AT4G00050 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681925 | 0.0 | LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052. | |||
GenBank | LN713265 | 0.0 | LN713265.1 Cucumis melo genomic chromosome, chr_11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008459727.1 | 0.0 | PREDICTED: transcription factor UNE10 | ||||
TrEMBL | A0A1S3CAX9 | 0.0 | A0A1S3CAX9_CUCME; transcription factor UNE10 | ||||
STRING | XP_008459727.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5676 | 33 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00050.1 | 6e-75 | bHLH family protein |