PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C021456P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 296aa    MW: 31697.4 Da    PI: 4.3902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C021456P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014269292123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C  C++sF +   L++H +  H
  MELO3C021456P1 269 FSCATCDRSFGSDGALQSHSKAkH 292
                     89*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.72269295IPR007087Zinc finger, C2H2
PROSITE patternPS000280271292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEFWGVEVKP GQALSVQPGD MNYVHLSQAT LGDLKKDKAN DPVTIFLKID DQKLVLGVLS  60
ADKFPQISFD LVFEKEFELS HNGKGGSIYC LGYRAPMEDQ GQEEYSDSDF GSEDEELGLL  120
SAENGKPSDK EKSIGGKIFG LKPESSKKAD AKSIEPSKEE DDDSEDDDSS DEGSDSDESD  180
EEMLEGDSDS DDEDEGTDSE EETPKKVNES SKKRSNESAS KTPVSKKAKL ASAEKTDSKK  240
GGHTATPHPA KKPAKSPGKA ETPKSGGQFS CATCDRSFGS DGALQSHSKA KHGAK*
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819241e-121LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132651e-121LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458624.10.0PREDICTED: histone deacetylase HDT1-like
SwissprotQ8LJS21e-70HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLA0A1S3C9I30.0A0A1S3C9I3_CUCME; histone deacetylase HDT1-like
STRINGXP_008458624.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-28histone deacetylase 3