PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C020606P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 192aa    MW: 21359.8 Da    PI: 5.3155
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C020606P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000112749123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H++ H
  MELO3C020606P1 27 YECNFCKRGFTNAQALGGHMNIH 49
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.8E-62553IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.93E-72554No hitNo description
PROSITE profilePS5015712.032754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MEIDQQEDAS CEYQEQSGVN QSTARSYECN FCKRGFTNAQ ALGGHMNIHR KEKAKLKQSI  60
TTSSLSSSPN KMVVDTPKMM STPTRFPWVV ISPSTREEHG RSNRCGLEET LISEEFQQLP  120
LFVENNPSNI DQNLEIRQVL PIEVDCDSKL GSPSRHGSSV SELDLELRLG PEPQNSTPST  180
SLPTGRTTHF F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008457447.11e-141PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A1S3C6791e-139A0A1S3C679_CUCME; transcriptional regulator TAC1-like
STRINGXP_008457447.11e-140(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-18C2H2 family protein