PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

MELO3C019745P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 300aa MW: 32647.2 Da PI: 8.6283

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C019745P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.4	2.6e-34	23	101	2	66
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............s 66 +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l + + MELO3C019745P1 23 TARKDRHSKVYTSRGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLSANlppcnttapssvpvE 101 789************************************************************9888864332222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-31	23	89	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	32.739	25	83	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGINTIAGQI LHVPGGGLVV RSTARKDRHS KVYTSRGLRD RRVRLSAHTA IQFYDVQDRL 60 GYDRPSKAVD WLIKKAKSAI DKLSANLPPC NTTAPSSVPV ETETNGIDVV VDRSECCKNH 120 DFLFQSQFSE NLIPPPPPPP VESGVGFRSC RNLGLSLQTQ NSPHNVHHQT VFYTANSGNS 180 GPGFDDGFEK IVAWNTNVFG SIPIVNQSST AFPQRGPLQS SLESTVPHYT WNDLSIVSAG 240 KRHPNPIQEN PSPSIPRFIS NELPHLDVHG RFQNDGDGDD DGNGNGGKAS SRSSSYSRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	6e-23	30	83	1	54	Putative transcription factor PCF6
5zkt_B	6e-23	30	83	1	54	Putative transcription factor PCF6
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681921	0.0	LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBank	LN713265	0.0	LN713265.1 Cucumis melo genomic chromosome, chr_11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008456416.2	0.0	PREDICTED: transcription factor TCP4-like
TrEMBL	A0A1S3C3A0	0.0	A0A1S3C3A0_CUCME; transcription factor TCP4-like
STRING	XP_008456416.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1163	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	4e-37	TCP domain protein 10