PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C018555P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 312aa    MW: 34983.6 Da    PI: 8.1583
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C018555P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12151198355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + h  +ErrRR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  MELO3C018555P1 151 QDHILAERRRREKLSQRFIALSAIIPGL-----KKMDKASVLGDAIKYLKQLQ 198
                     57999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.77148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10151198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-17152209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.09E-12153202No hitNo description
SuperFamilySSF474596.64E-17153211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-14154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MEDNGFVNQW HKSSMDDLGL HPLAAAFGEN LQHSYAQTNI DQKASLNHSH NAILGYVKQL  60
KSDGWSSYQT TNHLPNSQVV AYPTVSVSAS NYTNQMDFTR PKEEVVCPQS ISNLPSDMLI  120
SQGSLAHQSH TTKSNRGTRS PSTNSRIPQA QDHILAERRR REKLSQRFIA LSAIIPGLKK  180
MDKASVLGDA IKYLKQLQEK VKILEEQTRR KDIESVVFVK KSHVFADGND TSKEEDEPLP  240
EIEARFCDKN VLIRIHCEKK KDVIERTVAE IEKLHLIIVN SSVMSFGSLA FDITIIAQVI  300
TTHHLHNPPN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13152207863Transcription factor MYC2
5gnj_B5e-13152207863Transcription factor MYC2
5gnj_E5e-13152207863Transcription factor MYC2
5gnj_F5e-13152207863Transcription factor MYC2
5gnj_G5e-13152207863Transcription factor MYC2
5gnj_I5e-13152207863Transcription factor MYC2
5gnj_M5e-13152207863Transcription factor MYC2
5gnj_N5e-13152207863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156161ERRRRE
2157162RRRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455093.10.0PREDICTED: transcription factor bHLH18-like isoform X2
RefseqXP_016901719.10.0PREDICTED: transcription factor bHLH18-like isoform X2
SwissprotQ9T0721e-53BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S3BZP10.0A0A1S3BZP1_CUCME; transcription factor bHLH18-like isoform X2
STRINGXP_008455092.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-56bHLH family protein