PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C017257P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 531aa    MW: 57979.4 Da    PI: 8.2333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C017257P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.73.7e-17259308255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr l+P++    ++K +Ka+ L ++veYI+ Lq
  MELO3C017257P1 259 RSKHSATEQRRRSKINDRFQMLRGLIPHS----DQKRDKASFLLEVVEYIQFLQ 308
                     889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.4E-25254329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-19256328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.437257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-15259312No hitNo description
PfamPF000101.2E-14259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-13263313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MELPQPRPFG AEGSKSTHDF LSLYTHSSPQ LDPRSTAQGS YLKTHDFLQP QERIRKASTK  60
EEADVERPPP PAPPPSVEHL LPGGIGTYSI SHVSYFDQRV VLPKPEGSVF TGVRSSSSAE  120
RNDENSNGSS FAAAGSGFTL WEECSVKKGK TGKENNVGDR PHEPRASTSQ WTASMERPSQ  180
SSSNNHHNTF SCLSSSQPTG TKNPTFMEML KSAQSTSQDE ELDDDGDFVI KKETSTANKG  240
GLRIKVDGNS SDQKANTPRS KHSATEQRRR SKINDRFQML RGLIPHSDQK RDKASFLLEV  300
VEYIQFLQEK VQKYEGSYQE WNQEMAKLVP LRNNQRSADV YNDQPRGISS GSVPALVLAA  360
KFIEKNSPLS PIVPGSSHNA VDSDTSSAST LKAVDHHSGR TSNALPFPMS MPPKLSACTR  420
DGNLVPQPPK QLSSGTDHSS LRPEIRSCEA RCYNSDVAVA SEMQKEQDLT IEGGTINISS  480
IYSQGLLNTL THALQSSGVD LSQARISVQI ELGKRATRRA ISPASIVKVF *
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453321.10.0PREDICTED: transcription factor BIM1
SwissprotQ9LEZ31e-110BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A1S3BX430.0A0A1S3BX43_CUCME; transcription factor BIM1
STRINGXP_008453321.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-103bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]