PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015943P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 176aa    MW: 18652.6 Da    PI: 8.9494
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015943P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000214769123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C ++F ++  L  H++ H
  MELO3C015943P1 47 FRCQFCRRVFANSQALGGHQNAH 69
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-44373IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.27E-64474No hitNo description
PROSITE profilePS5015711.4484774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSNHNPSSIL KLFGFPLVEH DDNPPETPDG VGGGADTTIN SDDDRKFRCQ FCRRVFANSQ  60
ALGGHQNAHK RERQRAKRAL YFHAAALRPP SLYSSVFPSN FGGDGGGGGS RILPRNGNGY  120
FAETAAYGGV SASSGRWMFG NSSEGKMENS GCKLGGEKGL CVDLHLKLSP SNSST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451655.11e-127PREDICTED: zinc finger protein 6-like
TrEMBLA0A1S3BSU11e-126A0A1S3BSU1_CUCME; zinc finger protein 6-like
STRINGXP_008451655.11e-127(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.18e-15C2H2 family protein