PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C015776P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 27097.6 Da PI: 9.7414 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.1 | 1.3e-31 | 177 | 234 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ MELO3C015776P1 177 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 234 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.0E-18 | 128 | 173 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 8.9E-34 | 163 | 235 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.067 | 170 | 236 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 173 | 235 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-38 | 175 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-27 | 177 | 234 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDLLQCRNLH MGPLCLGNPS LELNTNAKSC SIQQIQSQSA ALYHHHLLQN RVVLNNNPNP 60 PQHEMVYLRS NNGVNLNFDS SSCTQHTMSS TRSFISSLSI DGSVANLDGS AFHLIGAPRS 120 SDQNSYHKRK CNGRGEDGSV KCGSNGRCHC SKKRKHRVKR SIKVPAISNK LADIPPDDYS 180 WRKYGQKPIK GSPHPRGYYK CSSMRGCPAR KHVERCLEEP SMLIVTYEGE HNHPRIPSQP 240 ANT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-20 | 168 | 237 | 7 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU984036 | 0.0 | GU984036.1 Cucumis sativus WRKY protein (WRKY51) mRNA, complete cds. | |||
GenBank | HF912423 | 0.0 | HF912423.1 Cucumis sativus mRNA for WRKY transcription factor 21 (WRKY-21 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008451288.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 2e-92 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A1S3BQJ0 | 0.0 | A0A1S3BQJ0_CUCME; LOW QUALITY PROTEIN: probable WRKY transcription factor 21 | ||||
STRING | XP_008451288.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 2e-86 | WRKY DNA-binding protein 21 |