PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015355P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 392aa    MW: 45412.8 Da    PI: 7.0417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015355P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.61.3e-49141422128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     p GfrFhPtdeel+++yLk+k+ g++  + ++i++vdi+k+ePw+Lp   + +++e++w+fFs +d ky++g+r++rat +gyWk+tgkd+++ +
  MELO3C015355P1  14 PIGFRFHPTDEELINHYLKNKIVGQESLV-QFIPQVDICKYEPWELPgLsNDQTGEQRWFFFSAQDFKYSNGRRSKRATGTGYWKSTGKDRKIRA 107
                     89************************777.89***************5235556888************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + +++l+g+kktLvfy+gr pkg +t+Wv+hey+l
  MELO3C015355P1 108 RgTNKLIGTKKTLVFYRGRVPKGIRTNWVIHEYHL 142
                     967778****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-5410161IPR003441NAC domain
PROSITE profilePS5100553.48113162IPR003441NAC domain
PfamPF023652.7E-2614142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MANRLLLPSP NQWPIGFRFH PTDEELINHY LKNKIVGQES LVQFIPQVDI CKYEPWELPG  60
LSNDQTGEQR WFFFSAQDFK YSNGRRSKRA TGTGYWKSTG KDRKIRARGT NKLIGTKKTL  120
VFYRGRVPKG IRTNWVIHEY HLHPEPNFRY LTSYVICLLK RKWDESDVLI RDEAERNDLL  180
TSTNVATTNQ NKEIPGNGQS LIQPDLHVSD YDFPELQSPL FSEPEPTSLG FQITNSHGAH  240
VINRPTDEAI NSVFVDDENF FHEGTPNSSF SDFNWEELLN LVDEDQSSSG MDTTPTCQYD  300
HDFPIFFDKR ARSIIQTKNM PIIEESHRSP LASKILKTGG VEELSSTRHR KESFQINSCH  360
RDDSDKELRN FSSRRQLKYH KELQSVELQK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-401414216140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-177LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-177LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450706.11e-178PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A1S3BQH11e-177A0A1S3BQH1_CUCME; protein CUP-SHAPED COTYLEDON 3-like
STRINGXP_008450704.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95643343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.17e-55NAC transcription factor-like 9