PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014261P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 318aa    MW: 35623.5 Da    PI: 8.7108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014261P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-17130179155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  MELO3C014261P1 130 SQYRGVTYYRRTGRWESHIWD------SgKQVYLGGFDTAHSAARAYDRAAIKFRG 179
                     78*******************......44************************997 PP
2AP243.67.1e-14222272155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  MELO3C014261P1 222 SKFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDKAAIKYNG 272
                     79********.7******5553..2.26**********99************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-10130179IPR001471AP2/ERF domain
CDDcd000185.40E-23130189No hitNo description
SuperFamilySSF541712.81E-16130188IPR016177DNA-binding domain
SMARTSM003804.4E-30131193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-18131187IPR001471AP2/ERF domain
PROSITE profilePS5103217.741131187IPR001471AP2/ERF domain
PfamPF008472.7E-9222272IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-17222281IPR016177DNA-binding domain
CDDcd000184.19E-24222282No hitNo description
SMARTSM003801.9E-29223286IPR001471AP2/ERF domain
PROSITE profilePS5103215.699223280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-16223281IPR001471AP2/ERF domain
PRINTSPR003672.9E-6224235IPR001471AP2/ERF domain
PRINTSPR003672.9E-6262282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MLDLNLRVLP GDFTSGGTDL QPFNLSPSAV ESPISSSVLN ADHSNVNGDD DSSSNADCGF  60
TFSFSILNNS NDDQRDRKAH FPVAGGFSSD VYSQRKGVDS DFVRATNGIM VQQSAHPVKK  120
GRRGPKSRSS QYRGVTYYRR TGRWESHIWD SGKQVYLGGF DTAHSAARAY DRAAIKFRGV  180
HADINFNIND YNEEIKQMGN FSKEEFVHIL RRQSTGFSRG SSKFRGVTLH KCGRWEARMG  240
QFLGKKYVYL GLFDSEIEAA RAYDKAAIKY NGREAVTNFD QSSYETELAF ESENQGIQVT  300
HFPILTFYLL RIIFTCI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449284.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotB8AMA95e-95AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB55e-95AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A1S3BMB10.0A0A1S3BMB1_CUCME; floral homeotic protein APETALA 2-like isoform X1
STRINGXP_008449284.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-80AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]