PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013917P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 348aa    MW: 39160.9 Da    PI: 5.0167
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013917P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19195245255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + +  r++lg+f ta eAa+a+++a+ kl+g
  MELO3C013917P1 195 HYRGVRQRP-WGKFAAEIRDP---NrRGSRVWLGTFETAIEAARAYDRAAFKLRG 245
                     6********.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.08E-31195253No hitNo description
SuperFamilySSF541711.05E-22195254IPR016177DNA-binding domain
PROSITE profilePS5103224.447195253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32195254IPR001471AP2/ERF domain
PfamPF008473.3E-14195245IPR001471AP2/ERF domain
SMARTSM003805.5E-39195259IPR001471AP2/ERF domain
PRINTSPR003671.6E-13196207IPR001471AP2/ERF domain
PRINTSPR003671.6E-13235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEFVNLEEAV ALESIKLHLL GELSPFPRIL PSDDDNLCVS SSDRRSVSSG SSSTSNNCVL  60
NISDYFNSDE IFEFSPDLMP TESSSMSSND DFFGFEMKPN VIDLTTPKST ELVEFETKPR  120
VFEDFNSRTQ YSNSSIEVES KISQVANSNR KRANLKISLP NKTTQWINFD SAVEKKNPVV  180
VQQRSRDVEA ERKVHYRGVR QRPWGKFAAE IRDPNRRGSR VWLGTFETAI EAARAYDRAA  240
FKLRGSKAIL NFPLEASNSY SEPVVVGKRR REEEEVEAVV VKKEKRGEEE EEVKQAAGDV  300
SYLKDMPLTP SSWSMVWDGE TKGVFNIPPL SPLSPHPAFG FPQLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-30195254261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448805.10.0PREDICTED: ethylene-responsive transcription factor 5
TrEMBLA0A1S3BL690.0A0A1S3BL69_CUCME; ethylene-responsive transcription factor 5
STRINGXP_008448805.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.13e-46ethylene responsive element binding factor 5