PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MELO3C012393P1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Family | C2H2 | ||||||||
Protein Properties | Length: 362aa MW: 40491.6 Da PI: 7.1141 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00048 | 237 | 259 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H+r+H MELO3C012393P1 237 HECAICGAEFTSGQALGGHMRRH 259 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.0E-12 | 160 | 185 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.16E-7 | 161 | 183 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 161 | 188 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.8 | 161 | 183 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 163 | 183 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.16E-7 | 232 | 259 | No hit | No description |
Pfam | PF13912 | 6.9E-12 | 236 | 261 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.515 | 237 | 259 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.056 | 237 | 259 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 239 | 259 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEVVDHQENS DMGSKEQQQA ALIAKGKRTK RQRLHSPIPF AVPTNSSSGE LGGFVADHDD 60 HHSDFVPQNN NDHYQNNTNF SPSSSSAHDE LLQQFNNNTS TTTEEEEDMA NCLILLAQGR 120 PPCSPLTKQL DTGPFPHVTN NVRRFSAENV EKGGGVGCYA YECKTCYRTF PSFQALGGHR 180 ASHKKPKAME AEKKHILSSD DEEIQFKNNN ITTTNSLSLQ LNQRGSLNNS SGKAKVHECA 240 ICGAEFTSGQ ALGGHMRRHR AMPVGTNTAL SLTPMNMETE DQRQPKRQRS VLSLDLDLNL 300 PAPQEHDQRS ESKFLIKSNQ QQQQQQPQQQ QQQQQQQQHN NKQQQQQPLV FPARTLVDCH 360 Y* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00487 | DAP | Transfer from AT5G04390 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681896 | 0.0 | LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016. | |||
GenBank | LN713264 | 0.0 | LN713264.1 Cucumis melo genomic chromosome, chr_10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008446814.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
TrEMBL | A0A1S3BFZ9 | 0.0 | A0A1S3BFZ9_CUCME; zinc finger protein ZAT5-like | ||||
STRING | XP_008446814.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 1e-52 | C2H2 family protein |